Browse Element(s) Details


Os.51867.1.S1_at

Description gb:AK064123.1
DB_XREF= gi:32974141
TID=Os.51867.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51867 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-102-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-C10, full insert sequence.
FL= gb:AK064123.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4275010/11DDT domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42714Os.12778.1.S2_at11/117+25570407..25576615retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g42714OsAffx.19542.3.S1_x_at10/117+25570407..25576615retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g42714OsAffx.9949.1.S1_at1/117+25570407..25576615retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g42730Os.12018.1.S1_at11/117+25583333..25584539EF hand family protein, expressed
LOC_Os07g42740Os.31290.1.S1_at11/117+25589533..25591115expressed protein
LOC_Os07g42750Os.51867.1.S1_at10/117+25599947..25604818DDT domain containing protein, expressed
LOC_Os07g42760Os.45890.1.S1_at11/117+25610528..25614569SAP domain-containing protein, putative, expressed
LOC_Os07g42770Os.12643.3.S1_x_at11/117+25615470..25620127CDPK-related protein kinase, putative, expressed
LOC_Os07g42770Os.12643.1.S1_a_at11/117+25615470..25620127CDPK-related protein kinase, putative, expressed
LOC_Os07g42780OsAffx.28878.1.S1_at11/117+25625908..25626796hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51867.1.S1_at--627--2431NONE
AAAAGCTTTTCCAGGATTCGATGTT
NONE
Os.51867.1.S1_at--722--1171Chr07:25604515..25604539 (25 bp)
AGTACATGTCAATCTCCTCAAGCTA
LOC_Os07g42750
Os.51867.1.S1_at--1055--7071Chr07:25604522..25604546 (25 bp)
GTCAATCTCCTCAAGCTACTTTTGT
LOC_Os07g42750
Os.51867.1.S1_at--1034--7591Chr07:25604560..25604584 (25 bp)
GGGCAGCAATGATGTGTTTGTTCCA
LOC_Os07g42750
Os.51867.1.S1_at--1087--7411Chr07:25604573..25604597 (25 bp)
GTGTTTGTTCCACGATCTTCTAAAG
LOC_Os07g42750
Os.51867.1.S1_at--942--5471Chr07:25604620..25604644 (25 bp)
GAACTTTGTGAGTCTCGATAGTACC
LOC_Os07g42750
Os.51867.1.S1_at--839--6491Chr07:25604636..25604660 (25 bp)
GATAGTACCAATTTATGCTTCAGTT
LOC_Os07g42750
Os.51867.1.S1_at--1124--4031Chr07:25604673..25604697 (25 bp)
CGAGTATTAAATTATCTTCCGAAGT
LOC_Os07g42750
Os.51867.1.S1_at--164--51Chr07:25604746..25604770 (25 bp)
ATTGTTGTAACACCAAGTGCTGTGC
LOC_Os07g42750
Os.51867.1.S1_at--1141--2851Chr07:25604760..25604784 (25 bp)
AAGTGCTGTGCTATTCGTTTGGTGA
LOC_Os07g42750
Os.51867.1.S1_at--1033--4871Chr07:25604769..25604793 (25 bp)
GCTATTCGTTTGGTGATCTTATCAT
LOC_Os07g42750
Target Sequence 
AAAAGCTTTTCCAGGATTCGATGTTGTTGGGGGAAGTACATGTCAATCTCCTCAAGCTACTTTTGTTAAACACAGAACGG
GGCAGCAATGATGTGTTTGTTCCACGATCTTCTAAAGACTGCAGATTTTTAAGTTTTGTGAACTTTGTGAGTCTCGATAG
TACCAATTTATGCTTCAGTTAATTTCAAATCTCGAGTATTAAATTATCTTCCGAAGTTTGAATGAATCAAACTCATTTTT
TTCTGCACTGGAAAGTTGAATATATATTGTTGTAACACCAAGTGCTGTGCTATTCGTTTGGTGATCTTATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51867.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis