Browse Element(s) Details


Os.12643.3.S1_x_at

Description gb:NM_189848.1
DB_XREF= gi:34906779
GEN=P0560B08.20
TID=Os.12643.3
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.12643 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative CDPK(calcium-dependent protein kinase)-related protein kinase (P0560B08.20), mRNA.
PROD=putative CDPK(calcium-dependent proteinkinase)-related protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4277011/11CDPK-related protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42740Os.31290.1.S1_at11/117+25589533..25591115expressed protein
LOC_Os07g42750Os.51867.1.S1_at10/117+25599947..25604818DDT domain containing protein, expressed
LOC_Os07g42760Os.45890.1.S1_at11/117+25610528..25614569SAP domain-containing protein, putative, expressed
LOC_Os07g42770Os.12643.3.S1_x_at11/117+25615470..25620127CDPK-related protein kinase, putative, expressed
LOC_Os07g42770Os.12643.1.S1_a_at11/117+25615470..25620127CDPK-related protein kinase, putative, expressed
LOC_Os07g42780OsAffx.28878.1.S1_at11/117+25625908..25626796hypothetical protein
LOC_Os07g42790OsAffx.16687.1.S1_at11/117+25631975..25632871hypothetical protein
LOC_Os07g42800Os.26773.1.S1_at10/117+25635025..25638199AT hook-containing MAR binding 1, putative, expressed
LOC_Os07g42810Os.26704.1.S1_a_at11/117+25639156..25644150Adaptor complexes medium subunit family protein, expressed
LOC_Os07g42810Os.26704.3.S1_at11/117+25639156..25644150Adaptor complexes medium subunit family protein, expressed
LOC_Os07g42820Os.2213.1.S1_a_at11/117+25644294..25647463small GTP-binding protein domain containing protein, expressed
LOC_Os07g42820Os.2213.2.S1_x_at11/117+25644294..25647463small GTP-binding protein domain containing protein, expressed
LOC_Os07g42820Os.2213.1.S1_at10/117+25644294..25647463small GTP-binding protein domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004723molecular_functioncalcium-dependent protein serine/threonine phosphatase activity
GO:0005509molecular_functioncalcium ion binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12643.3.S1_x_at--544--5051Chr07:25617114..25617213 (25 bp)
GCAGCACAGGCTTTAAGTCATCCAT
LOC_Os07g42770
Os.12643.3.S1_x_at--656--131Chr07:25617069..25617093 (25 bp)
ATTAAGCTGCCACTGGACATCCTTA
LOC_Os07g42770
Os.12643.3.S1_x_at--445--5671Chr07:25617054..25617078 (25 bp)
GACATCCTTATATTCCGACTTATCA
LOC_Os07g42770
Os.12643.3.S1_x_at--719--1551Chr07:25617028..25617052 (25 bp)
AGCTTATATTCGTTCCTCATCATTG
LOC_Os07g42770
Os.12643.3.S1_x_at--541--2691Chr07:25616691..25617023 (25 bp)
AAGCTGCTCTAAGGGCTCTATCGAA
LOC_Os07g42770
Os.12643.3.S1_x_at--928--1251Chr07:25616342..25616463 (25 bp)
AGATTCTTGTCTCGTTAAGCGCTCT
LOC_Os07g42770
Os.12643.3.S1_x_at--1030--1511Chr07:25616281..25616305 (25 bp)
AGCAGCAGTTAGTGTGCACCAGCTT
LOC_Os07g42770
Os.12643.3.S1_x_at--1129--10031Chr07:25616245..25616269 (25 bp)
TAGATGGGAGCAACATGCCCGTTCC
LOC_Os07g42770
Os.12643.3.S1_x_at--41--4231Chr07:25616227..25616251 (25 bp)
CCGTTCCGCTTATGATTTCTTTGAG
LOC_Os07g42770
Os.12643.3.S1_x_at--1019--511Chr07:25616068..25616216 (25 bp)
ATCGAGCTATCGAACTGGGTCTCAG
LOC_Os07g42770
Os.12643.3.S1_x_at--1006--11Chr07:25616011..25616035 (25 bp)
ATTGGATCAGGCACACCGACGGGAA
LOC_Os07g42770
Target Sequence 
GCAGCACAGGCTTTAAGTCATCCATGGATCAGAAATTACAATGACATTAAGCTGCCACTGGACATCCTTATATTCCGACT
TATCAAAGCTTATATTCGTTCCTCATCATTGCGAAAAGCTGCTCTAAGGGCTCTATCGAAGACTTTGACTGTTGATGAGC
TTTTCTATCTGAAAGGACAGTTTTCTCTGTTGGAACCAGACAGAAATGGATGCATCACTCTAGATAATATCAGAATGGCC
TTAACAAGAGAAGCCACTTATGCTATGAAGGAATCACGAGTTCAGGAGATTCTTGTCTCGTTAAGCGCTCTTCAGTACAG
AAGAATGGACTTTCAAGAGTTCTGTGCAGCAGCAGTTAGTGTGCACCAGCTTGAAGCATTAGATAGATGGGAGCAACATG
CCCGTTCCGCTTATGATTTCTTTGAGAAGGATGGCAATCGAGCTATCGAACTGGGTCTCAGCCCTTCAGTGCCATTGCAT
GTTGTTCTGCAAGATTGGATCAGGCACACCGACGGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12643.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis