Browse Element(s) Details


Os.26704.3.S1_at

Description gb:NM_189856.1
DB_XREF= gi:34906795
GEN=P0594D10.11
TID=Os.26704.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.26704 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST D40457(S2456)~similar to clathrin coat assembly protein (P0594D10.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) contains EST D40457(S2456)~similar to clathrin coat assembly protein (P0594D10.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4281011/11Adaptor complexes medium subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42760Os.45890.1.S1_at11/117+25610528..25614569SAP domain-containing protein, putative, expressed
LOC_Os07g42770Os.12643.3.S1_x_at11/117+25615470..25620127CDPK-related protein kinase, putative, expressed
LOC_Os07g42770Os.12643.1.S1_a_at11/117+25615470..25620127CDPK-related protein kinase, putative, expressed
LOC_Os07g42780OsAffx.28878.1.S1_at11/117+25625908..25626796hypothetical protein
LOC_Os07g42790OsAffx.16687.1.S1_at11/117+25631975..25632871hypothetical protein
LOC_Os07g42800Os.26773.1.S1_at10/117+25635025..25638199AT hook-containing MAR binding 1, putative, expressed
LOC_Os07g42810Os.26704.1.S1_a_at11/117+25639156..25644150Adaptor complexes medium subunit family protein, expressed
LOC_Os07g42810Os.26704.3.S1_at11/117+25639156..25644150Adaptor complexes medium subunit family protein, expressed
LOC_Os07g42820Os.2213.1.S1_a_at11/117+25644294..25647463small GTP-binding protein domain containing protein, expressed
LOC_Os07g42820Os.2213.2.S1_x_at11/117+25644294..25647463small GTP-binding protein domain containing protein, expressed
LOC_Os07g42820Os.2213.1.S1_at10/117+25644294..25647463small GTP-binding protein domain containing protein, expressed
LOC_Os07g42834Os.7450.1.S1_at11/117+25650754..25658431expressed protein
LOC_Os07g42834Os.32823.2.S1_s_at10/117+25650754..25658431expressed protein
LOC_Os07g42834Os.4899.1.S2_at1/117+25650754..25658431expressed protein
LOC_Os07g42850OsAffx.16688.1.S1_at10/117+25659875..25660627hypothetical protein
LOC_Os07g42860Os.22837.1.A1_at11/117+25661213..25663621Cyclin, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0030125cellular_componentclathrin vesicle coat
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26704.3.S1_at--866--5291Chr07:25642743..25642767 (25 bp)
GAAGGCAAGCACCAACAAACGATTT
LOC_Os07g42810
Os.26704.3.S1_at--1087--8211Chr07:25642746..25642770 (25 bp)
GGCAAGCACCAACAAACGATTTAAT
LOC_Os07g42810
Os.26704.3.S1_at--1049--6512Chr07:25642763..25642787 (25 bp)
GATTTAATCTTTGCTTTCTTTCCTT
LOC_Os07g42810
Os.26704.3.S1_at--780--9072Chr07:25642774..25642798 (25 bp)
TGCTTTCTTTCCTTTATTTTCTCTT
LOC_Os07g42810
Os.26704.3.S1_at--764--4311Chr07:25642934..25642954 (21 bp)
CCTTCTTTCTTGTCTATGCTCCAAG
LOC_Os07g42810
Os.26704.3.S1_at--1152--10811Chr07:25642939..25642963 (25 bp)
TTGTCTATGCTCCAAGTGACTTCTC
LOC_Os07g42810
Os.26704.3.S1_at--362--631Chr07:25642945..25642969 (25 bp)
ATGCTCCAAGTGACTTCTCTGTTAT
LOC_Os07g42810
Os.26704.3.S1_at--1152--4351Chr07:25642950..25642974 (25 bp)
CCAAGTGACTTCTCTGTTATAAAAC
LOC_Os07g42810
Os.26704.3.S1_at--142--2431Chr07:25642970..25642994 (25 bp)
AAAACTTATGTCACGCTTCTTCTGG
LOC_Os07g42810
Os.26704.3.S1_at--1016--2031Chr07:25642973..25642997 (25 bp)
ACTTATGTCACGCTTCTTCTGGAAT
LOC_Os07g42810
Os.26704.3.S1_at--1065--9451Chr07:25642990..25643014 (25 bp)
TCTGGAATGCAGGAAATCTCACAAA
LOC_Os07g42810
Target Sequence 
GAAGGCAAGCACCAACAAACGATTTAATCTTTGCTTTCTTTCCTTTATTTTCTCTTCCTTCTTTCTTGTCTATGCTCCAA
GTGACTTCTCTGTTATAAAACTTATGTCACGCTTCTTCTGGAATGCAGGAAATCTCACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26704.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis