Browse Element(s) Details


Os.26773.1.S1_at

Description gb:AK099859.1
DB_XREF= gi:32985068
TID=Os.26773.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26773 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) AHM1(AT hook-containing MAR binding protein1)-like protein (P0560B08.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013110N04, full insert sequence.
FL= gb:AK099859.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4280010/11AT hook-containing MAR binding 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42760Os.45890.1.S1_at11/117+25610528..25614569SAP domain-containing protein, putative, expressed
LOC_Os07g42770Os.12643.3.S1_x_at11/117+25615470..25620127CDPK-related protein kinase, putative, expressed
LOC_Os07g42770Os.12643.1.S1_a_at11/117+25615470..25620127CDPK-related protein kinase, putative, expressed
LOC_Os07g42780OsAffx.28878.1.S1_at11/117+25625908..25626796hypothetical protein
LOC_Os07g42790OsAffx.16687.1.S1_at11/117+25631975..25632871hypothetical protein
LOC_Os07g42800Os.26773.1.S1_at10/117+25635025..25638199AT hook-containing MAR binding 1, putative, expressed
LOC_Os07g42810Os.26704.1.S1_a_at11/117+25639156..25644150Adaptor complexes medium subunit family protein, expressed
LOC_Os07g42810Os.26704.3.S1_at11/117+25639156..25644150Adaptor complexes medium subunit family protein, expressed
LOC_Os07g42820Os.2213.1.S1_a_at11/117+25644294..25647463small GTP-binding protein domain containing protein, expressed
LOC_Os07g42820Os.2213.2.S1_x_at11/117+25644294..25647463small GTP-binding protein domain containing protein, expressed
LOC_Os07g42820Os.2213.1.S1_at10/117+25644294..25647463small GTP-binding protein domain containing protein, expressed
LOC_Os07g42834Os.7450.1.S1_at11/117+25650754..25658431expressed protein
LOC_Os07g42834Os.32823.2.S1_s_at10/117+25650754..25658431expressed protein
LOC_Os07g42834Os.4899.1.S2_at1/117+25650754..25658431expressed protein
LOC_Os07g42850OsAffx.16688.1.S1_at10/117+25659875..25660627hypothetical protein
LOC_Os07g42860Os.22837.1.A1_at11/117+25661213..25663621Cyclin, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26773.1.S1_at--824--6771Chr07:25636430..25636454 (25 bp)
GTTAGCTGGTGATCTCTTGTACCAC
LOC_Os07g42800
Os.26773.1.S1_at--427--6971Chr07:25636448..25636472 (25 bp)
GTACCACCTGGCTGAGTAATCTTTA
LOC_Os07g42800
Os.26773.1.S1_at--659--8111Chr07:25636520..25636544 (25 bp)
GGACGTGTAGTATTTATCAGCTGCA
LOC_Os07g42800
Os.26773.1.S1_at--1078--2551Chr07:25636637..25636658 (22 bp)
AACTGAGTCTCATGGAGCTCCGATG
LOC_Os07g42800
Os.26773.1.S1_at--825--1591NONE
AGCTCCGATGTCTGGGTCATCTCAA
NONE
Os.26773.1.S1_at--1086--7691Chr07:25637845..25637869 (25 bp)
GGGTCATCTCAAAATCGCTCTGTAT
LOC_Os07g42800
Os.26773.1.S1_at--1114--6151Chr07:25637921..25637945 (25 bp)
GAGGATTCACATGGCCTGGTTTACA
LOC_Os07g42800
Os.26773.1.S1_at--488--9891Chr07:25637969..25637993 (25 bp)
TACTTGTCTTCTTCGTTGTTACTTG
LOC_Os07g42800
Os.26773.1.S1_at--543--7511Chr07:25638005..25638029 (25 bp)
GTGGATGTCCTAAGTCCTAACTGAA
LOC_Os07g42800
Os.26773.1.S1_at--214--8691Chr07:25638055..25638079 (25 bp)
TGTGCATCCTGTTTCCGTCAATGAG
LOC_Os07g42800
Os.26773.1.S1_at--241--7351Chr07:25638103..25638127 (25 bp)
GTGACTATTATGTTACTTCGCCATG
LOC_Os07g42800
Target Sequence 
GTTAGCTGGTGATCTCTTGTACCACCTGGCTGAGTAATCTTTAGTCTTTACTAGTTTGTAGACTGTAGATTATCCCCCAA
ATTAGTTGGGGGACGTGTAGTATTTATCAGCTGCAAATTAATTGAAGGAGTTTACTGGCGAAGGAAATAATGCACTCTGC
ATGCCCACATGGATGATCAGCAAGGCTTAACGAAGAGTTTATCATGCAACTGAGTCTCATGGAGCTCCGATGTCTGGGTC
ATCTCAAAATCGCTCTGTATTTTGTGACATCAGTTGATTCCTTGAGTACTTATATCAAAGCAGCTGAATAAGAGGATTCA
CATGGCCTGGTTTACAGGATATCGGTAGCTTGTAATTTATACTTGTCTTCTTCGTTGTTACTTGTTAGCTAGGTTGTGGA
TGTCCTAAGTCCTAACTGAAAATAAGTATGGGCCATATGCATGTGTGTGCATCCTGTTTCCGTCAATGAGCAATGAAGCA
GAAAATACTTCTAGTGACTATTATGTTACTTCGCCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26773.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis