Browse Element(s) Details


Os.7450.1.S1_at

Description gb:AK070250.1
DB_XREF= gi:32980274
TID=Os.7450.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7450 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs C72105(E1001),AU101116(E1001)~similarto Arabidopsis thaliana chromosome 1 T15M6.13~unknown protein (P0594D10.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023041I23, full insert sequence.
FL= gb:AK070250.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4283411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42780OsAffx.28878.1.S1_at11/117+25625908..25626796hypothetical protein
LOC_Os07g42790OsAffx.16687.1.S1_at11/117+25631975..25632871hypothetical protein
LOC_Os07g42800Os.26773.1.S1_at10/117+25635025..25638199AT hook-containing MAR binding 1, putative, expressed
LOC_Os07g42810Os.26704.1.S1_a_at11/117+25639156..25644150Adaptor complexes medium subunit family protein, expressed
LOC_Os07g42810Os.26704.3.S1_at11/117+25639156..25644150Adaptor complexes medium subunit family protein, expressed
LOC_Os07g42820Os.2213.1.S1_a_at11/117+25644294..25647463small GTP-binding protein domain containing protein, expressed
LOC_Os07g42820Os.2213.2.S1_x_at11/117+25644294..25647463small GTP-binding protein domain containing protein, expressed
LOC_Os07g42820Os.2213.1.S1_at10/117+25644294..25647463small GTP-binding protein domain containing protein, expressed
LOC_Os07g42834Os.7450.1.S1_at11/117+25650754..25658431expressed protein
LOC_Os07g42834Os.32823.2.S1_s_at10/117+25650754..25658431expressed protein
LOC_Os07g42834Os.4899.1.S2_at1/117+25650754..25658431expressed protein
LOC_Os07g42850OsAffx.16688.1.S1_at10/117+25659875..25660627hypothetical protein
LOC_Os07g42860Os.22837.1.A1_at11/117+25661213..25663621Cyclin, N-terminal domain containing protein, expressed
LOC_Os07g42869NANA7+25669191..25669658NA
LOC_Os07g42880Os.42789.1.S1_at11/117+25670506..25672380Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os07g42890Os.16990.1.S1_a_at11/117+25676187..25678108GRAM domain-containing protein, putative, expressed
LOC_Os07g42890Os.18586.1.S1_at1/117+25676187..25678108GRAM domain-containing protein, putative, expressed
LOC_Os07g42900Os.24981.1.A1_at10/117+25681707..25688178Helicase associated domain family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7450.1.S1_at--593--6751Chr07:25651536..25651560 (25 bp)
GTTCAAGAAGCACTACCCGAGAGGG
LOC_Os07g42834
Os.7450.1.S1_at--903--5771Chr07:25651747..25651771 (25 bp)
GACGAGCTCTTCCTCGACTGCGACG
LOC_Os07g42834
Os.7450.1.S1_at--395--4291Chr07:25651802..25651826 (25 bp)
CCTACTGGGAGTGCCTGGCGCTGTA
LOC_Os07g42834
Os.7450.1.S1_at--1139--1931Chr07:25651844..25651868 (25 bp)
ACGGCGTCGCCGTGCATCAATGGTG
LOC_Os07g42834
Os.7450.1.S1_at--155--4251Chr07:25651853..25651877 (25 bp)
CCGTGCATCAATGGTGGGAGCTCAT
LOC_Os07g42834
Os.7450.1.S1_at--853--1571Chr07:25651871..25651895 (25 bp)
AGCTCATGAATGCTCGACCACGTAG
LOC_Os07g42834
Os.7450.1.S1_at--284--5271Chr07:25651878..25651902 (25 bp)
GAATGCTCGACCACGTAGAGAGAGA
LOC_Os07g42834
Os.7450.1.S1_at--197--2791Chr07:25651966..25651990 (25 bp)
AAGAGATCACTTTGGGTTCAGAACA
LOC_Os07g42834
Os.7450.1.S1_at--590--2531Chr07:25651991..25652015 (25 bp)
AACTATGAATATGCAGGGTACTGAT
LOC_Os07g42834
Os.7450.1.S1_at--110--7691Chr07:25652006..25652030 (25 bp)
GGGTACTGATTAACAGCTAACGGAT
LOC_Os07g42834
Os.7450.1.S1_at--154--5151Chr07:25652080..25652104 (25 bp)
GCAAAACAGTTGTTCCAAGATTGGA
LOC_Os07g42834
Target Sequence 
GTTCAAGAAGCACTACCCGAGAGGGNAGCGCGTGTTCGACATGGTGCGCCTCGACGCCGCCGACGCGACGGAGCCGGCGG
CGAGCTCATCGGCGGCGGGGATCGCCGAGTGGCTGGAAGGGAACGTGAGGGAGGAGGACTACGTGGTGGTGAAGGCCGGC
GTGGAGGCCGTGGAGGAGATCCTCCGCAGGCGCGCCGCCGTCCGCCGCGTCGACGAGCTCTTCCTCGACTGCGACGCCGG
CGCCGGCGCCGACGCGGCNCGCCGCCCCTACTGGGAGTGCCTGGCGCTGTACGGCCGGCTGCGTGACCACGGCGTCGCCG
TGCATCAATGGTGGGAGCTCATGAATGCTCGACCACGTAGAGAGAGAAAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGTGAAATGATGGAGCTCATGAGAGGGAAGAGATCACTTTGGGTTCAGAACAAACTATGAATATGCAGGGTACTGAT
TAACAGCTAACGGATAAATATATTTGGTTTTGGTTGGGGAAGAGTATAAACTTATGTAAATCAAGCAAAACAGTTGTTCC
AAGATTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7450.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis