Browse Element(s) Details


Os.42789.1.S1_at

Description gb:NM_189865.1
DB_XREF= gi:34906813
GEN=P0594D10.20
TID=Os.42789.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42789 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) similar to membrane-associated salt-inducible protein (P0594D10.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) similar to membrane-associated salt-inducible protein (P0594D10.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4288011/11Rf1 protein, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42820Os.2213.1.S1_a_at11/117+25644294..25647463small GTP-binding protein domain containing protein, expressed
LOC_Os07g42820Os.2213.2.S1_x_at11/117+25644294..25647463small GTP-binding protein domain containing protein, expressed
LOC_Os07g42820Os.2213.1.S1_at10/117+25644294..25647463small GTP-binding protein domain containing protein, expressed
LOC_Os07g42834Os.7450.1.S1_at11/117+25650754..25658431expressed protein
LOC_Os07g42834Os.32823.2.S1_s_at10/117+25650754..25658431expressed protein
LOC_Os07g42834Os.4899.1.S2_at1/117+25650754..25658431expressed protein
LOC_Os07g42850OsAffx.16688.1.S1_at10/117+25659875..25660627hypothetical protein
LOC_Os07g42860Os.22837.1.A1_at11/117+25661213..25663621Cyclin, N-terminal domain containing protein, expressed
LOC_Os07g42869NANA7+25669191..25669658NA
LOC_Os07g42880Os.42789.1.S1_at11/117+25670506..25672380Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os07g42890Os.16990.1.S1_a_at11/117+25676187..25678108GRAM domain-containing protein, putative, expressed
LOC_Os07g42890Os.18586.1.S1_at1/117+25676187..25678108GRAM domain-containing protein, putative, expressed
LOC_Os07g42900Os.24981.1.A1_at10/117+25681707..25688178Helicase associated domain family protein, expressed
LOC_Os07g42910OsAffx.28880.1.S1_s_at11/117+25690143..25693050Cytochrome c oxidase subunit, putative, expressed
LOC_Os07g42910Os.16582.1.S1_at11/117+25690143..25693050Cytochrome c oxidase subunit, putative, expressed
LOC_Os07g42910OsAffx.28880.1.S1_at10/117+25690143..25693050Cytochrome c oxidase subunit, putative, expressed
LOC_Os07g42924OsAffx.5614.1.S1_at11/117+25695200..25702385oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os07g42924OsAffx.5615.1.S1_at11/117+25695200..25702385oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os07g42924Os.34358.1.S1_at11/117+25695200..25702385oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os07g42924Os.11584.2.S1_x_at1/117+25695200..25702385oxidoreductase, zinc-binding dehydrogenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42789.1.S1_at--760--8911Chr07:25671795..25671819 (25 bp)
TGAGCTATTTCACTATATTCCTTTG
LOC_Os07g42880
Os.42789.1.S1_at--304--231Chr07:25671809..25671833 (25 bp)
ATATTCCTTTGCTTGTAGCCATGTG
LOC_Os07g42880
Os.42789.1.S1_at--1084--8131Chr07:25671879..25671903 (25 bp)
GGACAACAACTTTCCACTAGATGTG
LOC_Os07g42880
Os.42789.1.S1_at--672--3691Chr07:25671917..25671941 (25 bp)
CTATGATCCATGGTGCTTGCAAAGC
LOC_Os07g42880
Os.42789.1.S1_at--295--5731Chr07:25671992..25672016 (25 bp)
GACTGACTCCTGATGCTGTTACATA
LOC_Os07g42880
Os.42789.1.S1_at--715--2271Chr07:25672042..25672066 (25 bp)
AAATCTGGAGACATGGAGGCGGCAA
LOC_Os07g42880
Os.42789.1.S1_at--171--8471Chr07:25672095..25672119 (25 bp)
TGGCTTTTTGCCTGACGTTGCCGTA
LOC_Os07g42880
Os.42789.1.S1_at--1068--5751Chr07:25672108..25672132 (25 bp)
GACGTTGCCGTATTTGATTCACTGA
LOC_Os07g42880
Os.42789.1.S1_at--241--6571Chr07:25672123..25672147 (25 bp)
GATTCACTGATCCAAGGTTATAGCA
LOC_Os07g42880
Os.42789.1.S1_at--645--3131Chr07:25672221..25672245 (25 bp)
AATTATTTCCACTCTTTCCACTTCT
LOC_Os07g42880
Os.42789.1.S1_at--196--2311Chr07:25672312..25672336 (25 bp)
AAAGGCAACATCAATTCACCCCAGG
LOC_Os07g42880
Target Sequence 
TGAGCTATTTCACTATATTCCTTTGCTTGTAGCCATGTGTGAACAGGGTATGATGGAACGAGCGAGGAATTTGTTCAATG
AAATGGACAACAACTTTCCACTAGATGTGGTTGCATATAGCACTATGATCCATGGTGCTTGCAAAGCAGGGGACTTGAAA
ACTGCNAAAGAGTTGCTTAAGAGCATNGTTGATGAGGGACTGACTCCTGATGCTGTTACATATTCTATAGTAATCAATAT
GTTTGCTAAATCTGGAGACATGGAGGCGGCAAATGGTGTGCTTAAACAGATGACAGCAAGTGGCTTTTTGCCTGACGTTG
CCGTATTTGATTCACTGATCCAAGGTTATAGCACAAAAGGAGAGATAAACAAGGTTCTCGAGTTAATTCGGGAAATGATA
ACAAAGAATATAGCACTTGATTCAAAAATTATTTCCACTCTTTCCACTTCTCTGGTTGCAAGCAATGAAGGCAAAGCATT
GTTGCAGAGCTTGCCTGATTTCAGTGCAGAAATATCAAAAGGCAACATCAATTCACCCCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42789.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis