Browse Element(s) Details


OsAffx.5614.1.S1_at

Description tigr:9635.m04301
TID=OsAffx.5614.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=oxidoreductase, zinc-binding dehydrogenase family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4292411/11oxidoreductase, zinc-binding dehydrogenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42880Os.42789.1.S1_at11/117+25670506..25672380Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os07g42890Os.16990.1.S1_a_at11/117+25676187..25678108GRAM domain-containing protein, putative, expressed
LOC_Os07g42890Os.18586.1.S1_at1/117+25676187..25678108GRAM domain-containing protein, putative, expressed
LOC_Os07g42900Os.24981.1.A1_at10/117+25681707..25688178Helicase associated domain family protein, expressed
LOC_Os07g42910OsAffx.28880.1.S1_s_at11/117+25690143..25693050Cytochrome c oxidase subunit, putative, expressed
LOC_Os07g42910Os.16582.1.S1_at11/117+25690143..25693050Cytochrome c oxidase subunit, putative, expressed
LOC_Os07g42910OsAffx.28880.1.S1_at10/117+25690143..25693050Cytochrome c oxidase subunit, putative, expressed
LOC_Os07g42924OsAffx.5614.1.S1_at11/117+25695200..25702385oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os07g42924OsAffx.5615.1.S1_at11/117+25695200..25702385oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os07g42924Os.34358.1.S1_at11/117+25695200..25702385oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os07g42924Os.11584.2.S1_x_at1/117+25695200..25702385oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os07g42940Os.16704.1.S1_at11/117+25716112..25720314Serine/threonine-protein kinase SAPK2, putative, expressed
LOC_Os07g42950Os.8316.1.S1_at11/117+25721185..2572370740S ribosomal protein S6, putative, expressed
LOC_Os07g42960Os.22631.1.S1_a_at11/117+25724742..25728339Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5614.1.S1_at--471--4091Chr07:25696362..25696386 (25 bp)
CGAAATGTACGAGCTACTTGCTCTG
LOC_Os07g42924
OsAffx.5614.1.S1_at--326--1571Chr07:25696351..25696375 (25 bp)
AGCTACTTGCTCTGCTTGTGCAGTA
LOC_Os07g42924
OsAffx.5614.1.S1_at--1150--3831Chr07:25696340..25696364 (25 bp)
CTGCTTGTGCAGTAGAGACTAGATA
LOC_Os07g42924
OsAffx.5614.1.S1_at--557--5991Chr07:25696326..25696350 (25 bp)
GAGACTAGATACCAAGGCTCTGTTT
LOC_Os07g42924
OsAffx.5614.1.S1_at--477--2031Chr07:25696323..25696347 (25 bp)
ACTAGATACCAAGGCTCTGTTTGGG
LOC_Os07g42924
OsAffx.5614.1.S1_at--814--8071Chr07:25696299..25696323 (25 bp)
GGAGCTTTGTGTCAGCTGCAGTTTT
LOC_Os07g42924
OsAffx.5614.1.S1_at--424--7451Chr07:25696291..25696315 (25 bp)
GTGTCAGCTGCAGTTTTTCTCATAA
LOC_Os07g42924
OsAffx.5614.1.S1_at--998--9651Chr07:25696288..25696312 (25 bp)
TCAGCTGCAGTTTTTCTCATAAACT
LOC_Os07g42924
OsAffx.5614.1.S1_at--111--2552Chr07:25696267..25696291 (25 bp)
AACTGCTTCTGCTAGAAACTGCCAC
LOC_Os07g42924
OsAffx.5614.1.S1_at--162--5551Chr07:25696253..25696277 (25 bp)
GAAACTGCCACAAACAGTCCACAGT
LOC_Os07g42924
OsAffx.5614.1.S1_at--470--1991Chr07:25696250..25696274 (25 bp)
ACTGCCACAAACAGTCCACAGTTTC
LOC_Os07g42924
Target Sequence 
CGAAATGTACGAGCTACTTGCTCTGCTTGTGCAGTAGAGACTAGATACCAAGGCTCTGTTTGGGGAGCTTTGTGTCAGCT
GCAGTTTTTCTCATAAACTGCTTCTGCTAGAAACTGCCACAAACAGTCCACAGTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5614.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis