Browse Element(s) Details


Os.16704.1.S1_at

Description gb:AB125303.1
DB_XREF= gi:46917331
GEN=sapk2
TID=Os.16704.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.16704 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) sapk2 mRNA for serinethreonine protein kinase SAPK2, complete cds.
PROD=serinethreonine protein kinase SAPK2
FL= gb:AB125303.1 gb:AK103945.1 gb:AK070965.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4294011/11Serine/threonine-protein kinase SAPK2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42910OsAffx.28880.1.S1_s_at11/117+25690143..25693050Cytochrome c oxidase subunit, putative, expressed
LOC_Os07g42910Os.16582.1.S1_at11/117+25690143..25693050Cytochrome c oxidase subunit, putative, expressed
LOC_Os07g42910OsAffx.28880.1.S1_at10/117+25690143..25693050Cytochrome c oxidase subunit, putative, expressed
LOC_Os07g42924OsAffx.5614.1.S1_at11/117+25695200..25702385oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os07g42924OsAffx.5615.1.S1_at11/117+25695200..25702385oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os07g42924Os.34358.1.S1_at11/117+25695200..25702385oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os07g42924Os.11584.2.S1_x_at1/117+25695200..25702385oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os07g42940Os.16704.1.S1_at11/117+25716112..25720314Serine/threonine-protein kinase SAPK2, putative, expressed
LOC_Os07g42950Os.8316.1.S1_at11/117+25721185..2572370740S ribosomal protein S6, putative, expressed
LOC_Os07g42960Os.22631.1.S1_a_at11/117+25724742..25728339Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative, expressed
LOC_Os07g42970OsAffx.5616.1.S1_at11/117+25739319..25743185Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os07g42970Os.51127.2.S1_x_at1/117+25739319..25743185Cytokinin-O-glucosyltransferase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0010119biological_processregulation of stomatal movement
GO:0004672molecular_functionprotein kinase activity
GO:0009931molecular_functioncalcium-dependent protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16704.1.S1_at--735--6171Chr07:25719534..25719558 (25 bp)
GAGGACCCTGACGAACCAAGAAACT
LOC_Os07g42940
Os.16704.1.S1_at--538--1631Chr07:25719696..25719720 (25 bp)
AGCGTACAATACATGGTTCCTGATT
LOC_Os07g42940
Os.16704.1.S1_at--879--6691Chr07:25719711..25719735 (25 bp)
GTTCCTGATTATGTTCGAGTTTCGA
LOC_Os07g42940
Os.16704.1.S1_at--273--5951Chr07:25719780..25719884 (25 bp)
GAGCAACGAATTACCATTCCTGAGA
LOC_Os07g42940
Os.16704.1.S1_at--687--3231Chr07:25719907..25719931 (25 bp)
CAAGAACCTGCCGATCGAGATGACT
LOC_Os07g42940
Os.16704.1.S1_at--845--6071Chr07:25719935..25719959 (25 bp)
GAGTACCAGATGAGCGTCCAGATGA
LOC_Os07g42940
Os.16704.1.S1_at--590--6231Chr07:25720031..25720055 (25 bp)
GATGGCTCCAAATTCTCCGGGCAGA
LOC_Os07g42940
Os.16704.1.S1_at--306--8391Chr07:25720121..25720145 (25 bp)
GGCGACTTCGTGTGCGCATTGTGAC
LOC_Os07g42940
Os.16704.1.S1_at--660--8931Chr07:25720142..25720166 (25 bp)
TGACGAGGCCGTGAACTTGCTTTCT
LOC_Os07g42940
Os.16704.1.S1_at--397--6631Chr07:25720192..25720216 (25 bp)
GTTGTGCTGCTGTTCATTTCTGAGA
LOC_Os07g42940
Os.16704.1.S1_at--1013--10591Chr07:25720209..25720233 (25 bp)
TTCTGAGAGCTCCATTCTGTTGTTG
LOC_Os07g42940
Target Sequence 
GAGGACCCTGACGAACCAAGAAACTTCCGCAAGACAATTACTCGGATACTAAGCGTACAATACATGGTTCCTGATTATGT
TCGAGTTTCGATGGAATNNAGACATCTTCTGTCCCGGATTTTCGTGNCAAACCCAGAGCAACGAATTACCATTCCTGAGA
TCAAGAACCACCCATGGTTCCTCAAGAACCTGCCGATCGAGATGACTGACGAGTACCAGATGAGCGTCCAGATGAACGAC
ATCAACACCCCGTCACAGGGCCTGGAGGAGATCATGGCCATCATACAGGAGGCGCGGAAGCCGGGTGATGGCTCCAAATT
CTCCGGGCAGATCCCGGGCCTAGGGAGCATGGAGCTCGACGACNTTGACACCGACGACATCGACGTCGAGGACAGCGGCG
ACTTCGTGTGCGCATTGTGACGAGGCCGTGAACTTGCTTTCTCTTCTTGGAGTGTGCTGCTCCTTTTGTTGTGCTGCTGT
TCATTTCTGAGAGCTCCATTCTGTTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16704.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis