Browse Element(s) Details


Os.34358.1.S1_at

Description gb:AK071704.1
DB_XREF= gi:32981727
TID=Os.34358.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34358 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST C99136(E10204)~similar to alcohol dehydrogenase (P0594D10.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023114G08, full insert sequence.
FL= gb:AK071704.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4292411/11oxidoreductase, zinc-binding dehydrogenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42880Os.42789.1.S1_at11/117+25670506..25672380Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os07g42890Os.16990.1.S1_a_at11/117+25676187..25678108GRAM domain-containing protein, putative, expressed
LOC_Os07g42890Os.18586.1.S1_at1/117+25676187..25678108GRAM domain-containing protein, putative, expressed
LOC_Os07g42900Os.24981.1.A1_at10/117+25681707..25688178Helicase associated domain family protein, expressed
LOC_Os07g42910OsAffx.28880.1.S1_s_at11/117+25690143..25693050Cytochrome c oxidase subunit, putative, expressed
LOC_Os07g42910Os.16582.1.S1_at11/117+25690143..25693050Cytochrome c oxidase subunit, putative, expressed
LOC_Os07g42910OsAffx.28880.1.S1_at10/117+25690143..25693050Cytochrome c oxidase subunit, putative, expressed
LOC_Os07g42924OsAffx.5614.1.S1_at11/117+25695200..25702385oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os07g42924OsAffx.5615.1.S1_at11/117+25695200..25702385oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os07g42924Os.34358.1.S1_at11/117+25695200..25702385oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os07g42924Os.11584.2.S1_x_at1/117+25695200..25702385oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os07g42940Os.16704.1.S1_at11/117+25716112..25720314Serine/threonine-protein kinase SAPK2, putative, expressed
LOC_Os07g42950Os.8316.1.S1_at11/117+25721185..2572370740S ribosomal protein S6, putative, expressed
LOC_Os07g42960Os.22631.1.S1_a_at11/117+25724742..25728339Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34358.1.S1_at--913--8191Chr07:25695952..25695976 (25 bp)
GGAAGATCGGTCATCGGGTCGCTCT
LOC_Os07g42924
Os.34358.1.S1_at--819--6331Chr07:25695896..25695920 (25 bp)
GATGCTGGCTCAGAAGTACCTGGAC
LOC_Os07g42924
Os.34358.1.S1_at--1106--371Chr07:25695422..25695446 (25 bp)
ATCAACAGGGCGTTCGAGCTGCTCA
LOC_Os07g42924
Os.34358.1.S1_at--389--9611Chr07:25695373..25695397 (25 bp)
TCATCTGGATGGACGGCGCCAAGGT
LOC_Os07g42924
Os.34358.1.S1_at--100--3271Chr07:25695342..25695366 (25 bp)
CAACGGCGAGTGATCGCGGCATCGT
LOC_Os07g42924
Os.34358.1.S1_at--95--7191Chr07:25695319..25695343 (25 bp)
GTCGTCCTGTCGCTAATAACCGATT
LOC_Os07g42924
Os.34358.1.S1_at--1113--6551Chr07:25695298..25695322 (25 bp)
GATTAACCGCTGATACCCTGGGAAA
LOC_Os07g42924
Os.34358.1.S1_at--1088--2111Chr07:25695274..25695298 (25 bp)
ACAGTTGAGCCTCGCTGTTAACTCA
LOC_Os07g42924
Os.34358.1.S1_at--693--8771Chr07:25695259..25695283 (25 bp)
TGTTAACTCAAACTGTCCGTCGTGT
LOC_Os07g42924
Os.34358.1.S1_at--492--9291Chr07:25695244..25695268 (25 bp)
TCCGTCGTGTCTTTCTGAAGGCTTT
LOC_Os07g42924
Os.34358.1.S1_at--481--10811Chr07:25695221..25695245 (25 bp)
TTGTCTGTTCTCTGTTCTGCATAAA
LOC_Os07g42924
Target Sequence 
GGAAGATCGGTCATCGGGTCGCTCTTCGGCGGCATCAAGCCCAAGAACGACATCCCGATGCTGGCTCAGAAGTACCTGGA
CAAGGAGCTGGAGCTGGAGGAGTTCATCACGCACGAGATGGGGTTCGAGGAGATCAACAGGGCGTTCGAGCTGCTCACGC
AGGGGAAGAGCATCCGCTGCATCATCTGGATGGACGGCGCCAAGGTGATCGACAACGGCGAGTGATCGCGGCATCGTCGT
CCTGTCGCTAATAACCGATTAACCGCTGATACCCTGGGAAACAGTTGAGCCTCGCTGTTAACTCAAACTGTCCGTCGTGT
CTTTCTGAAGGCTTTGTCTGTTCTCTGTTCTGCATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34358.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis