Browse Element(s) Details


Os.18586.1.S1_at

Description gb:AK103009.1
DB_XREF= gi:32988218
TID=Os.18586.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18586 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033116J07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033116J07, full insert sequence.
FL= gb:AK103009.1 gb:AK059865.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0361011/11ADP-ribosylation factor, putative, expressed
LOC_Os07g428901/11GRAM domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03580Os.26491.1.S1_at11/112+1457228..1461428Transcription factor HBP-1a, putative, expressed
LOC_Os02g03580OsAffx.24084.1.S1_at11/112+1457228..1461428Transcription factor HBP-1a, putative, expressed
LOC_Os02g03580OsAffx.24084.1.S1_x_at11/112+1457228..1461428Transcription factor HBP-1a, putative, expressed
LOC_Os02g03580Os.47413.1.S1_at1/112+1457228..1461428Transcription factor HBP-1a, putative, expressed
LOC_Os02g03590Os.54039.1.S1_at6/112+1461924..1468160expressed protein
LOC_Os02g03600Os.51934.1.S1_at8/112+1469295..1474710DnaJ domain containing protein, expressed
LOC_Os02g03600Os.50120.1.S1_at2/112+1469295..1474710DnaJ domain containing protein, expressed
LOC_Os02g03610Os.18586.1.S1_at11/112+1476344..1480285ADP-ribosylation factor, putative, expressed
LOC_Os02g03620Os.9115.1.S1_at11/112+1481242..1485111Ubiquitin ligase SINAT2, putative, expressed
LOC_Os02g03630OsAffx.20490.1.S1_at6/112+1499923..1503468transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18586.1.S1_at--1097--10171Chr02:1479642..1479666 (25 bp)
TATACAAGGGACATGCGCTCTCCGT
LOC_Os02g03610
Os.18586.1.S1_at--891--9931Chr02:1479679..1479703 (25 bp)
TACGATGGACTTGATTGGCTCGCAT
LOC_Os02g03610
Os.18586.1.S1_at--1140--1151Chr02:1479900..1479924 (25 bp)
AGTCAACCAATCTGATGCTCCTGGG
LOC_Os02g03610
Os.18586.1.S1_at--291--7131Chr02:1479927..1479951 (25 bp)
GTCATCCTTCTGTTCATCCAATGAG
LOC_Os02g03610
Os.18586.1.S1_at--962--51Chr02:1479955..1479979 (25 bp)
ATTGAGTTCCTTGGTGCATGCGTGA
LOC_Os02g03610
Os.18586.1.S1_at--597--611Chr02:1479972..1479996 (25 bp)
ATGCGTGATCTTCGCTATCGGCTTT
LOC_Os02g03610
Os.18586.1.S1_at--1086--1071Chr02:1480020..1480044 (25 bp)
AGGGCATTCAATCGCTGTGTTCATA
LOC_Os02g03610
Os.18586.1.S1_at--1064--5871Chr02:1480140..1480164 (25 bp)
GAGCTGAGTAGTTTGCACGGACCGT
LOC_Os02g03610
Os.18586.1.S1_at--634--1931Chr02:1480156..1480180 (25 bp)
ACGGACCGTGCTTGTGTATACTTGA
LOC_Os02g03610
Os.18586.1.S1_at--587--4372Chr07:25677267..25677286 (20 bp)
CCACATGATTGTTTGCTGATTGCCT
LOC_Os07g42890
Os.18586.1.S1_at--582--1951Chr02:1480259..1480283 (25 bp)
ACTGGGCTTTGGCTGAATGTTCCTC
LOC_Os02g03610
Target Sequence 
TATACAAGGGACATGCGCTCTCCGTGGTGAGGGACTCTACGATGGACTTGATTGGCTCGCATCCACCCTGAAGCAATTGC
AAGAGACAGGCCATGCAACTTCAGTCGCCGGCCCTTCCATCTGATTTCGCTAGAGAAGAGATGCCAATGCCTCAACTAGT
CAACCAATCTGATGCTCCTGGGCAGTCATCCTTCTGTTCATCCAATGAGAATATTGAGTTCCTTGGTGCATGCGTGATCT
TCGCTATCGGCTTTCTTGGTGTGGCTGCTCGCAGAGGAGGGCATTCAATCGCTGTGTTCATATGAGCAAACTCATTTGAC
AGTAACTTGCGGCATAATTTTCTCCTAAAATGTTTGTAAAGTGTTTGGACGTCTGTGTACTTTGTTGTAGTGAACAAGAG
CTGAGTAGTTTGCACGGACCGTGCTTGTGTATACTTGATGGCACGTCCACATGATTGTTTGCTGATTGCCTATCAATAAG
ACGGTTGGATGATGGATGTTGTTTGGTGATATATAAACTGGGCTTTGGCTGAATGTTCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18586.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis