Browse Element(s) Details


Os.9115.1.S1_at

Description gb:AK119901.1
DB_XREF= gi:37989524
TID=Os.9115.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9115 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-301-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-181-D02, full insert sequence.
FL= gb:AK111954.1 gb:AK119901.1 gb:AK104468.1 gb:AK111795.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0362011/11Ubiquitin ligase SINAT2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03580Os.26491.1.S1_at11/112+1457228..1461428Transcription factor HBP-1a, putative, expressed
LOC_Os02g03580OsAffx.24084.1.S1_at11/112+1457228..1461428Transcription factor HBP-1a, putative, expressed
LOC_Os02g03580OsAffx.24084.1.S1_x_at11/112+1457228..1461428Transcription factor HBP-1a, putative, expressed
LOC_Os02g03580Os.47413.1.S1_at1/112+1457228..1461428Transcription factor HBP-1a, putative, expressed
LOC_Os02g03590Os.54039.1.S1_at6/112+1461924..1468160expressed protein
LOC_Os02g03600Os.51934.1.S1_at8/112+1469295..1474710DnaJ domain containing protein, expressed
LOC_Os02g03600Os.50120.1.S1_at2/112+1469295..1474710DnaJ domain containing protein, expressed
LOC_Os02g03610Os.18586.1.S1_at11/112+1476344..1480285ADP-ribosylation factor, putative, expressed
LOC_Os02g03620Os.9115.1.S1_at11/112+1481242..1485111Ubiquitin ligase SINAT2, putative, expressed
LOC_Os02g03630OsAffx.20490.1.S1_at6/112+1499923..1503468transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g03640Os.44418.2.S1_at11/112+1507314..1511605hypothetical protein
LOC_Os02g03640Os.44418.1.S1_at2/112+1507314..1511605hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007275biological_processdevelopment
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9115.1.S1_at--798--10871Chr02:1481794..1481818 (25 bp)
TTGGACAGCACTTCTGCCTGCATTT
LOC_Os02g03620
Os.9115.1.S1_at--1004--9051Chr02:1481776..1481800 (25 bp)
TGCATTTTGAGGCATTCCTGCTGGG
LOC_Os02g03620
Os.9115.1.S1_at--959--6231Chr02:1481751..1481775 (25 bp)
GATGGCACCAGTGTACATGGCGTTC
LOC_Os02g03620
Os.9115.1.S1_at--424--3951Chr02:1481696..1481720 (25 bp)
CGGAACTTCTGCTACAGCCTGGAGG
LOC_Os02g03620
Os.9115.1.S1_at--307--8071Chr02:1481629..1481653 (25 bp)
GGAGCATCAGGGACAGCCACAAGAA
LOC_Os02g03620
Os.9115.1.S1_at--236--691Chr02:1481490..1481514 (25 bp)
ATGACGTGAACGATGCAGCAGCAGT
LOC_Os02g03620
Os.9115.1.S1_at--733--6491Chr02:1481453..1481477 (25 bp)
GATAGCAAATGCCAAGATCTCCCCA
LOC_Os02g03620
Os.9115.1.S1_at--1025--4171Chr02:1481432..1481456 (25 bp)
CCCATTGATGATTCCACGCTGATAG
LOC_Os02g03620
Os.9115.1.S1_at--1157--3171Chr02:1481343..1481367 (25 bp)
CAATTTGCGGCATGGTGGACTGGCT
LOC_Os02g03620
Os.9115.1.S1_at--807--8531Chr02:1481328..1481352 (25 bp)
TGGACTGGCTAGGACACATCTGTAG
LOC_Os02g03620
Os.9115.1.S1_at--1155--471Chr02:1481311..1481335 (25 bp)
ATCTGTAGCCTAGCATGTGTTGAAC
LOC_Os02g03620
Target Sequence 
TTGGACAGCACTTCTGCCTGCATTTTGAGGCATTCCTGCTGGGGATGGCACCAGTGTACATGGCGTTCCTGAGGTTCATG
GGCGAGGACAGCGAGGCCCGGAACTTCTGCTACAGCCTGGAGGTGGGCGGGAACGGGCGGAAGCTGACATGGCAGGGCAT
CCCCCGGAGCATCAGGGACAGCCACAAGAAGGTCCGGGACAGCTTCGACGGCCTCATCATCCACCGGAACATGGCCCTCT
TCTTCTCCGGCGGCAACAGGCAGGAGCTCAAGCTGCGGGTTACCGGCCGCATCTGGAAGGAGCAATGACGTGAACGATGC
AGCAGCAGTGCTACTGAGACTGATAGCAAATGCCAAGATCTCCCCATTGATGATTCCACGCTGATAGCACATTGTGATGT
GCTGGGAGAGGAGAAAAATGGGGAGACTTGTTGTGCATTGATGTACAAATACAATTTGCGGCATGGTGGACTGGCTAGGA
CACATCTGTAGCCTAGCATGTGTTGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9115.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis