Browse Element(s) Details


Os.26491.1.S1_at

Description gb:AK111901.1
DB_XREF= gi:37988564
TID=Os.26491.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.26491 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-209-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023076M20, full insert sequence.
FL= gb:AK112009.1 gb:AK111901.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0358011/11Transcription factor HBP-1a, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03530OsAffx.11878.1.S1_at11/112+1433310..1436848expressed protein
LOC_Os02g03530OsAffx.11878.1.S1_s_at11/112+1433310..1436848expressed protein
LOC_Os02g03540Os.27658.1.S1_a_at11/112+1437433..1441125Ribose-phosphate pyrophosphokinase 1, putative, expressed
LOC_Os02g03550Os.53507.1.S1_at10/112+1443911..1446402xyloglucan endotransglucosylase/hydrolase protein 28precursor, putative, expressed
LOC_Os02g03560Os.13649.1.S1_at11/112+1447139..1449635expressed protein
LOC_Os02g03570OsAffx.11879.1.S1_at11/112+1450176..1450766Hsp20/alpha crystallin family protein, expressed
LOC_Os02g03580Os.26491.1.S1_at11/112+1457228..1461428Transcription factor HBP-1a, putative, expressed
LOC_Os02g03580OsAffx.24084.1.S1_at11/112+1457228..1461428Transcription factor HBP-1a, putative, expressed
LOC_Os02g03580OsAffx.24084.1.S1_x_at11/112+1457228..1461428Transcription factor HBP-1a, putative, expressed
LOC_Os02g03580Os.47413.1.S1_at1/112+1457228..1461428Transcription factor HBP-1a, putative, expressed
LOC_Os02g03590Os.54039.1.S1_at6/112+1461924..1468160expressed protein
LOC_Os02g03600Os.51934.1.S1_at8/112+1469295..1474710DnaJ domain containing protein, expressed
LOC_Os02g03600Os.50120.1.S1_at2/112+1469295..1474710DnaJ domain containing protein, expressed
LOC_Os02g03610Os.18586.1.S1_at11/112+1476344..1480285ADP-ribosylation factor, putative, expressed
LOC_Os02g03620Os.9115.1.S1_at11/112+1481242..1485111Ubiquitin ligase SINAT2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009637biological_processresponse to blue light
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26491.1.S1_at--1100--4771Chr02:1460621..1460739 (25 bp)
GCTGCGCAAGCAGGCTGAGTGTGAA
LOC_Os02g03580
Os.26491.1.S1_at--242--611Chr02:1461229..1461253 (25 bp)
ATGCGCCTTGAGAGTTATCATCACG
LOC_Os02g03580
Os.26491.1.S1_at--673--6791Chr02:1461242..1461266 (25 bp)
GTTATCATCACGTGTAGTAGCATCT
LOC_Os02g03580
Os.26491.1.S1_at--1103--6951Chr02:1461258..1461282 (25 bp)
GTAGCATCTAATTGTTTAGCTCATG
LOC_Os02g03580
Os.26491.1.S1_at--149--6831Chr02:1461271..1461295 (25 bp)
GTTTAGCTCATGATTCTAGTAGGAC
LOC_Os02g03580
Os.26491.1.S1_at--259--9531Chr02:1461285..1461309 (25 bp)
TCTAGTAGGACATCACCATTTGTGT
LOC_Os02g03580
Os.26491.1.S1_at--797--8991Chr02:1461314..1461338 (25 bp)
TGAATTTACTAAGCATCTTTCTGTG
LOC_Os02g03580
Os.26491.1.S1_at--307--9911Chr02:1461320..1461344 (25 bp)
TACTAAGCATCTTTCTGTGCCAATT
LOC_Os02g03580
Os.26491.1.S1_at--98--10311Chr02:1461331..1461355 (25 bp)
TTTCTGTGCCAATTCGATCAGAATC
LOC_Os02g03580
Os.26491.1.S1_at--310--6451Chr02:1461346..1461370 (25 bp)
GATCAGAATCTGACATGGCAAATTG
LOC_Os02g03580
Os.26491.1.S1_at--740--8111Chr02:1461362..1461386 (25 bp)
GGCAAATTGTCGAGACCAAACTGTC
LOC_Os02g03580
Target Sequence 
GCTGCGCAAGCAGGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGAAAACTCCTCTCTTAGGGCTG
AGCTTGAACGGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAGGAAAAACTAGAGGGGAACAGT
GATTCAATACCTTATATGAATGAACAGAACGACACCAATGGCACCCACCAGAAGCAACAGGATTCTGATGCTCAGCCTAA
TGATGCGCCTTGAGAGTTATCATCACGTGTAGTAGCATCTAATTGTTTAGCTCATGATTCTAGTAGGACATCACCATTTG
TGTTAGATGAATTTACTAAGCATCTTTCTGTGCCAATTCGATCAGAATCTGACATGGCAAATTGTCGAGACCAAACTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26491.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis