Browse Element(s) Details


Os.53507.1.S1_at

Description gb:AK073018.1
DB_XREF= gi:32983041
TID=Os.53507.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53507 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023149H23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023149H23, full insert sequence.
FL= gb:AK073018.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0355010/11xyloglucan endotransglucosylase/hydrolase protein 28precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03490OsAffx.24083.1.S1_x_at11/112+1420014..1420997expressed protein
LOC_Os02g03490Os.10395.1.S1_s_at9/112+1420014..1420997expressed protein
LOC_Os02g03500Os.10395.1.S1_s_at9/112+1423747..1424390expressed protein
LOC_Os02g03510Os.11067.1.S1_at11/112+1427398..1428118expressed protein
LOC_Os02g03510Os.10395.1.S1_s_at9/112+1427398..1428118expressed protein
LOC_Os02g03520Os.12307.1.S1_at10/112+1430330..1430872expressed protein
LOC_Os02g03530OsAffx.11878.1.S1_at11/112+1433310..1436848expressed protein
LOC_Os02g03530OsAffx.11878.1.S1_s_at11/112+1433310..1436848expressed protein
LOC_Os02g03540Os.27658.1.S1_a_at11/112+1437433..1441125Ribose-phosphate pyrophosphokinase 1, putative, expressed
LOC_Os02g03550Os.53507.1.S1_at10/112+1443911..1446402xyloglucan endotransglucosylase/hydrolase protein 28precursor, putative, expressed
LOC_Os02g03560Os.13649.1.S1_at11/112+1447139..1449635expressed protein
LOC_Os02g03570OsAffx.11879.1.S1_at11/112+1450176..1450766Hsp20/alpha crystallin family protein, expressed
LOC_Os02g03580Os.26491.1.S1_at11/112+1457228..1461428Transcription factor HBP-1a, putative, expressed
LOC_Os02g03580OsAffx.24084.1.S1_at11/112+1457228..1461428Transcription factor HBP-1a, putative, expressed
LOC_Os02g03580OsAffx.24084.1.S1_x_at11/112+1457228..1461428Transcription factor HBP-1a, putative, expressed
LOC_Os02g03580Os.47413.1.S1_at1/112+1457228..1461428Transcription factor HBP-1a, putative, expressed
LOC_Os02g03590Os.54039.1.S1_at6/112+1461924..1468160expressed protein
LOC_Os02g03600Os.51934.1.S1_at8/112+1469295..1474710DnaJ domain containing protein, expressed
LOC_Os02g03600Os.50120.1.S1_at2/112+1469295..1474710DnaJ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010087biological_processvascular tissue development (sensu Tracheophyta)
GO:0016762molecular_functionxyloglucan:xyloglucosyl transferase activity
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53507.1.S1_at--101--7731Chr02:1445994..1446018 (25 bp)
GGTGTACTCCTACTGCTACGACACG
LOC_Os02g03550
Os.53507.1.S1_at--1084--4151Chr02:1446162..1446186 (25 bp)
CGCCGACATGTAGCGCAGCACATAA
LOC_Os02g03550
Os.53507.1.S1_at--401--6971Chr02:1446171..1446195 (25 bp)
GTAGCGCAGCACATAATCATATTTG
LOC_Os02g03550
Os.53507.1.S1_at--1046--10791Chr02:1446193..1446217 (25 bp)
TTGTTTCATCATTTCATCGTCGCGC
LOC_Os02g03550
Os.53507.1.S1_at--1122--9331NONE
TCGCGCCTTCGAGTCGTGGGATGAT
NONE
Os.53507.1.S1_at--64--3071Chr02:1446261..1446285 (25 bp)
AATAACGGACACACGCAACGACCAA
LOC_Os02g03550
Os.53507.1.S1_at--985--3251Chr02:1446276..1446300 (25 bp)
CAACGACCAATTGGGCCCACGAGGA
LOC_Os02g03550
Os.53507.1.S1_at--224--1611Chr02:1446309..1446333 (25 bp)
AGCGGCCAGGCCCAATTTGGAAGTT
LOC_Os02g03550
Os.53507.1.S1_at--18--1331Chr02:1446329..1446353 (25 bp)
AAGTTGAAGGCCCATTCCAAATTGG
LOC_Os02g03550
Os.53507.1.S1_at--923--31Chr02:1446349..1446373 (25 bp)
ATTGGGCCTGAATTCTAGTGGTTGA
LOC_Os02g03550
Os.53507.1.S1_at--594--7511Chr02:1446366..1446390 (25 bp)
GTGGTTGATCCAAATGTCATCTTTA
LOC_Os02g03550
Target Sequence 
GGTGTACTCCTACTGCTACGACACGCTGCGGTACCCGGCGCCGTTCCTGGAGTGCGACGTCGTGGAGTCCGAGCGCCGCC
GGTTCAAGGGCAGCGGCCACCTCCGCCTCGCCTTCCGCCGCCGCCGCCGCACCCGCCCCGGATCCCGGCCGGCGAGGCCC
ACCAGGGCCGCCGACATGTAGCGCAGCACATAATCATATTTGTTTCATCATTTCATCGTCGCGCCTTCGAGTCGTGGGAT
GATCGAAACGGGAGCAAAAGAAAAAAAAAATAACGGACACACGCAACGACCAATTGGGCCCACGAGGAAAGGAGAAAGCG
GCCAGGCCCAATTTGGAAGTTGAAGGCCCATTCCAAATTGGGCCTGAATTCTAGTGGTTGATCCAAATGTCATCTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53507.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis