Browse Element(s) Details


OsAffx.11878.1.S1_at

Description tigr:9630.m00255
TID=OsAffx.11878.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0353011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03460OsAffx.11877.1.S1_at11/112+1406098..1409346phosphatidate cytidylyltransferase family protein, expressed
LOC_Os02g03470Os.54187.1.A1_at11/112+1412107..1416005expressed protein
LOC_Os02g03470Os.27739.1.A1_at11/112+1412107..1416005expressed protein
LOC_Os02g03470Os.54187.1.A1_x_at11/112+1412107..1416005expressed protein
LOC_Os02g03480OsAffx.24082.1.S1_s_at11/112+1416610..1417705expressed protein
LOC_Os02g03490OsAffx.24083.1.S1_x_at11/112+1420014..1420997expressed protein
LOC_Os02g03490Os.10395.1.S1_s_at9/112+1420014..1420997expressed protein
LOC_Os02g03500Os.10395.1.S1_s_at9/112+1423747..1424390expressed protein
LOC_Os02g03510Os.11067.1.S1_at11/112+1427398..1428118expressed protein
LOC_Os02g03510Os.10395.1.S1_s_at9/112+1427398..1428118expressed protein
LOC_Os02g03520Os.12307.1.S1_at10/112+1430330..1430872expressed protein
LOC_Os02g03530OsAffx.11878.1.S1_at11/112+1433310..1436848expressed protein
LOC_Os02g03530OsAffx.11878.1.S1_s_at11/112+1433310..1436848expressed protein
LOC_Os02g03540Os.27658.1.S1_a_at11/112+1437433..1441125Ribose-phosphate pyrophosphokinase 1, putative, expressed
LOC_Os02g03550Os.53507.1.S1_at10/112+1443911..1446402xyloglucan endotransglucosylase/hydrolase protein 28precursor, putative, expressed
LOC_Os02g03560Os.13649.1.S1_at11/112+1447139..1449635expressed protein
LOC_Os02g03570OsAffx.11879.1.S1_at11/112+1450176..1450766Hsp20/alpha crystallin family protein, expressed
LOC_Os02g03580Os.26491.1.S1_at11/112+1457228..1461428Transcription factor HBP-1a, putative, expressed
LOC_Os02g03580OsAffx.24084.1.S1_at11/112+1457228..1461428Transcription factor HBP-1a, putative, expressed
LOC_Os02g03580OsAffx.24084.1.S1_x_at11/112+1457228..1461428Transcription factor HBP-1a, putative, expressed
LOC_Os02g03580Os.47413.1.S1_at1/112+1457228..1461428Transcription factor HBP-1a, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11878.1.S1_at--348--7651Chr02:1435782..1435806 (25 bp)
GGGAGGATGGACTCTGCCTGTAACT
LOC_Os02g03530
OsAffx.11878.1.S1_at--782--8011Chr02:1435783..1435807 (25 bp)
GGAGGATGGACTCTGCCTGTAACTT
LOC_Os02g03530
OsAffx.11878.1.S1_at--42--991Chr02:1435785..1435809 (25 bp)
AGGATGGACTCTGCCTGTAACTTGT
LOC_Os02g03530
OsAffx.11878.1.S1_at--42--6251Chr02:1435787..1435811 (25 bp)
GATGGACTCTGCCTGTAACTTGTTT
LOC_Os02g03530
OsAffx.11878.1.S1_at--1111--8511Chr02:1435789..1435813 (25 bp)
TGGACTCTGCCTGTAACTTGTTTGA
LOC_Os02g03530
OsAffx.11878.1.S1_at--756--5711Chr02:1435791..1435815 (25 bp)
GACTCTGCCTGTAACTTGTTTGAGA
LOC_Os02g03530
OsAffx.11878.1.S1_at--154--3771Chr02:1435793..1435817 (25 bp)
CTCTGCCTGTAACTTGTTTGAGAGG
LOC_Os02g03530
OsAffx.11878.1.S1_at--1098--3871Chr02:1435799..1435823 (25 bp)
CTGTAACTTGTTTGAGAGGCTGTGC
LOC_Os02g03530
OsAffx.11878.1.S1_at--615--9811Chr02:1435802..1435826 (25 bp)
TAACTTGTTTGAGAGGCTGTGCCGC
LOC_Os02g03530
OsAffx.11878.1.S1_at--859--2511Chr02:1435803..1435827 (25 bp)
AACTTGTTTGAGAGGCTGTGCCGCA
LOC_Os02g03530
OsAffx.11878.1.S1_at--526--2071Chr02:1435804..1435828 (25 bp)
ACTTGTTTGAGAGGCTGTGCCGCAA
LOC_Os02g03530
Target Sequence 
GGGAGGATGGACTCTGCCTGTAACTTGTTTGAGAGGCTGTGCCGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11878.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis