Browse Element(s) Details


OsAffx.11877.1.S1_at

Description tigr:9630.m00248
TID=OsAffx.11877.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=phosphatidate cytidylyltransferase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0346011/11phosphatidate cytidylyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03400Os.53067.1.S1_at11/112+1379250..1382389Microtubule associated protein containing protein, expressed
LOC_Os02g03410Os.2355.1.S1_at11/112+1387873..1394276Protein kinase domain containing protein, expressed
LOC_Os02g03420Os.54336.1.S1_at11/112+1394865..1397141PPR868-14, putative, expressed
LOC_Os02g03430Os.51630.1.A1_at11/112+1397698..1398983expressed protein
LOC_Os02g03440OsAffx.11876.1.S1_at10/112+1399613..1401222Sm protein, expressed
LOC_Os02g03450Os.5994.1.A1_at10/112+1402582..1404558Golgi SNARE 12 protein, putative, expressed
LOC_Os02g03460OsAffx.11877.1.S1_at11/112+1406098..1409346phosphatidate cytidylyltransferase family protein, expressed
LOC_Os02g03470Os.54187.1.A1_at11/112+1412107..1416005expressed protein
LOC_Os02g03470Os.27739.1.A1_at11/112+1412107..1416005expressed protein
LOC_Os02g03470Os.54187.1.A1_x_at11/112+1412107..1416005expressed protein
LOC_Os02g03480OsAffx.24082.1.S1_s_at11/112+1416610..1417705expressed protein
LOC_Os02g03490OsAffx.24083.1.S1_x_at11/112+1420014..1420997expressed protein
LOC_Os02g03490Os.10395.1.S1_s_at9/112+1420014..1420997expressed protein
LOC_Os02g03500Os.10395.1.S1_s_at9/112+1423747..1424390expressed protein
LOC_Os02g03510Os.11067.1.S1_at11/112+1427398..1428118expressed protein
LOC_Os02g03510Os.10395.1.S1_s_at9/112+1427398..1428118expressed protein
LOC_Os02g03520Os.12307.1.S1_at10/112+1430330..1430872expressed protein
LOC_Os02g03530OsAffx.11878.1.S1_at11/112+1433310..1436848expressed protein
LOC_Os02g03530OsAffx.11878.1.S1_s_at11/112+1433310..1436848expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008654biological_processphospholipid biosynthesis
GO:0016020cellular_componentmembrane
GO:0004605molecular_functionphosphatidate cytidylyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11877.1.S1_at--770--6271Chr02:1407789..1407813 (25 bp)
GATGTTACCGTGACGTTTTCTGCAT
LOC_Os02g03460
OsAffx.11877.1.S1_at--581--6191Chr02:1407734..1407758 (25 bp)
GAGGAAATCCTCGTTTTGCACAGCT
LOC_Os02g03460
OsAffx.11877.1.S1_at--388--10551Chr02:1407663..1407687 (25 bp)
TTCTGGGTTAAGCTCCGATCTGGAC
LOC_Os02g03460
OsAffx.11877.1.S1_at--714--6471Chr02:1407243..1407267 (25 bp)
GATACATCTGCTTTCCTTTGTGGAC
LOC_Os02g03460
OsAffx.11877.1.S1_at--542--7231Chr02:1406683..1406707 (25 bp)
GTCGCACTCCTCTTACTGATATAAG
LOC_Os02g03460
OsAffx.11877.1.S1_at--211--4731Chr02:1406630..1406654 (25 bp)
GCTGGTCTAACTGGCTGTGTACTGA
LOC_Os02g03460
OsAffx.11877.1.S1_at--103--9931Chr02:1406611..1406635 (25 bp)
TACTGACCACTGTGCTTCTTTCAAG
LOC_Os02g03460
OsAffx.11877.1.S1_at--731--2071Chr02:1406581..1406604 (24 bp)
ACATTGGCCAAGATCGCTGCTGAGT
LOC_Os02g03460
OsAffx.11877.1.S1_at--524--6111Chr02:1406206..1406229 (24 bp)
GAGTGCTACTGCTTACGGAATCTTG
LOC_Os02g03460
OsAffx.11877.1.S1_at--937--3051Chr02:1406188..1406212 (25 bp)
AATCTTGATCTTTCTGGGTTCGTTG
LOC_Os02g03460
OsAffx.11877.1.S1_at--928--8711Chr02:1406152..1406176 (25 bp)
TGTCGAGTCTCTGATCAAGCGTGAT
LOC_Os02g03460
Target Sequence 
GATGTTACCGTGACGTTTTCTGCATTCCTTATTGCGATATCATTGTTATTGCAAAGAGGAAATCCTCGTTTTGCACAGCT
GACTAGTTCAGTTTTTGGTCTCTTTTATTGTGGCTATCTTCCTTCTTTCTGGGTTAAGCTCCGATCTGGACTAGCTGCTC
CTGCCTTAAATACAATATGTGTTTTGCCAGAAATTGCATACAGTTGGCCAATACTTCTTGGTGGGCAAGCTCACTGGACA
GTTGGACTTGTAGCAACCTTGATTTCTATTAGTAGCATTATTGCCGCTGATACATCTGCTTTCCTTTGTGGACGGGCATT
TGGTCGCACTCCTCTTACTGATATAAGCCCTAAGAAGACCTTGGAGGGTGCTTTAGCTGGTCTAACTGGCTGTGTACTGA
CCACTGTGCTTCTTTCAAGCGTCTTACATTGGCCAAGATCGCTGCTGAGTGCTACTGCTTACGGAATCTTGATCTTTCTG
GGTTCGTTGTTCGGGGATCTTGTCGAGTCTCTGATCAAGCGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11877.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis