Browse Element(s) Details


Os.12307.1.S1_at

Description gb:AK120793.1
DB_XREF= gi:37990416
TID=Os.12307.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12307 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023012A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023012A05, full insert sequence.
FL= gb:AK120793.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0352010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03460OsAffx.11877.1.S1_at11/112+1406098..1409346phosphatidate cytidylyltransferase family protein, expressed
LOC_Os02g03470Os.54187.1.A1_at11/112+1412107..1416005expressed protein
LOC_Os02g03470Os.27739.1.A1_at11/112+1412107..1416005expressed protein
LOC_Os02g03470Os.54187.1.A1_x_at11/112+1412107..1416005expressed protein
LOC_Os02g03480OsAffx.24082.1.S1_s_at11/112+1416610..1417705expressed protein
LOC_Os02g03490OsAffx.24083.1.S1_x_at11/112+1420014..1420997expressed protein
LOC_Os02g03490Os.10395.1.S1_s_at9/112+1420014..1420997expressed protein
LOC_Os02g03500Os.10395.1.S1_s_at9/112+1423747..1424390expressed protein
LOC_Os02g03510Os.11067.1.S1_at11/112+1427398..1428118expressed protein
LOC_Os02g03510Os.10395.1.S1_s_at9/112+1427398..1428118expressed protein
LOC_Os02g03520Os.12307.1.S1_at10/112+1430330..1430872expressed protein
LOC_Os02g03530OsAffx.11878.1.S1_at11/112+1433310..1436848expressed protein
LOC_Os02g03530OsAffx.11878.1.S1_s_at11/112+1433310..1436848expressed protein
LOC_Os02g03540Os.27658.1.S1_a_at11/112+1437433..1441125Ribose-phosphate pyrophosphokinase 1, putative, expressed
LOC_Os02g03550Os.53507.1.S1_at10/112+1443911..1446402xyloglucan endotransglucosylase/hydrolase protein 28precursor, putative, expressed
LOC_Os02g03560Os.13649.1.S1_at11/112+1447139..1449635expressed protein
LOC_Os02g03570OsAffx.11879.1.S1_at11/112+1450176..1450766Hsp20/alpha crystallin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12307.1.S1_at--246--9611Chr02:1430358..1430382 (25 bp)
TCATCATCTCGCTATATACGTGCAA
LOC_Os02g03520
Os.12307.1.S1_at--699--1911Chr02:1430512..1430536 (25 bp)
ACGGGAAGACGGACGACGCCTGCAA
LOC_Os02g03520
Os.12307.1.S1_at--245--3271Chr02:1430534..1430558 (25 bp)
CAACTCCATGTGCAAGCAGGCTTGC
LOC_Os02g03520
Os.12307.1.S1_at--692--4531Chr02:1430588..1430612 (25 bp)
GCCCGACGAGGCTTGATCGCCGACG
LOC_Os02g03520
Os.12307.1.S1_at--138--1671Chr02:1430659..1430683 (25 bp)
AGCCGCCGGCTATATATACACTCGA
LOC_Os02g03520
Os.12307.1.S1_at--377--51Chr02:1430716..1430740 (25 bp)
ATTGATTTAACCGTCGAGTATCTAA
LOC_Os02g03520
Os.12307.1.S1_at--546--7751Chr02:1430776..1430800 (25 bp)
GGTGTACTCTCTCAGCGATTTGTAA
LOC_Os02g03520
Os.12307.1.S1_at--550--3391Chr02:1430788..1430812 (25 bp)
CAGCGATTTGTAATTCTTGTGTGAT
LOC_Os02g03520
Os.12307.1.S1_at--406--9731Chr02:1430812..1430836 (25 bp)
TAATTAAGTGAATTTGTTCCCTTGT
LOC_Os02g03520
Os.12307.1.S1_at--534--10651Chr02:1430828..1430852 (25 bp)
TTCCCTTGTTTCTTCTTTGATTAAT
LOC_Os02g03520
Os.12307.1.S1_at--340--3131Chr02:1430850..1430874 (25 bp)
AATTAATTACCGAGATGCCTTGCAA
NONE
Target Sequence 
TCATCATCTCGCTATATACGTGCAATGGCGGTGGCGCAGGTGAGCAGGACGGCCGTGGTGGCGCTGGTCCTCGTCGCCGT
GGTGGTGGCGGCGGCGTACGTGCCGGCGGCGACCGCGTACGGCTGCTTCGACGACTGCTACGAGCGCTGCGCCAACGGGA
AGACGGACGACGCCTGCAACTCCATGTGCAAGCAGGCTTGCAGCGGCGCCGGCGGCGGCCCCGCCGANGGCGCCCGACGA
GGCTTGATCGCCGACGACGAGCGCCGCCGNCGCCGCCGTCCATCGATCTCCATATCCGCCCGTAGCCGCCGGCTATATAT
ACACTCGATTATTTGTTTGTTTGTTGTTAATTCAAGTTTGATTGATTTAACCGTCGAGTATCTAAATTAGTTTGTTTTGT
TTGTTTAATTTATGCAAGCTNGGTGTACTCTCTCAGCGATTTGTAATTCTTGTGTGATAATTAAGTGAATTTGTTCCCTT
GTTTCTTCTTTGATTAATTAATTACCGAGATGCCTTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12307.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis