Browse Element(s) Details


OsAffx.24083.1.S1_x_at

Description tigr:9630.m00251
TID=OsAffx.24083.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0349011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03420Os.54336.1.S1_at11/112+1394865..1397141PPR868-14, putative, expressed
LOC_Os02g03430Os.51630.1.A1_at11/112+1397698..1398983expressed protein
LOC_Os02g03440OsAffx.11876.1.S1_at10/112+1399613..1401222Sm protein, expressed
LOC_Os02g03450Os.5994.1.A1_at10/112+1402582..1404558Golgi SNARE 12 protein, putative, expressed
LOC_Os02g03460OsAffx.11877.1.S1_at11/112+1406098..1409346phosphatidate cytidylyltransferase family protein, expressed
LOC_Os02g03470Os.54187.1.A1_at11/112+1412107..1416005expressed protein
LOC_Os02g03470Os.27739.1.A1_at11/112+1412107..1416005expressed protein
LOC_Os02g03470Os.54187.1.A1_x_at11/112+1412107..1416005expressed protein
LOC_Os02g03480OsAffx.24082.1.S1_s_at11/112+1416610..1417705expressed protein
LOC_Os02g03490OsAffx.24083.1.S1_x_at11/112+1420014..1420997expressed protein
LOC_Os02g03490Os.10395.1.S1_s_at9/112+1420014..1420997expressed protein
LOC_Os02g03500Os.10395.1.S1_s_at9/112+1423747..1424390expressed protein
LOC_Os02g03510Os.11067.1.S1_at11/112+1427398..1428118expressed protein
LOC_Os02g03510Os.10395.1.S1_s_at9/112+1427398..1428118expressed protein
LOC_Os02g03520Os.12307.1.S1_at10/112+1430330..1430872expressed protein
LOC_Os02g03530OsAffx.11878.1.S1_at11/112+1433310..1436848expressed protein
LOC_Os02g03530OsAffx.11878.1.S1_s_at11/112+1433310..1436848expressed protein
LOC_Os02g03540Os.27658.1.S1_a_at11/112+1437433..1441125Ribose-phosphate pyrophosphokinase 1, putative, expressed
LOC_Os02g03550Os.53507.1.S1_at10/112+1443911..1446402xyloglucan endotransglucosylase/hydrolase protein 28precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24083.1.S1_x_at--776--8372Chr02:1420816..1420840 (25 bp)
TGGAGGGAGTATATGCAAACCTCGC
LOC_Os02g03490
OsAffx.24083.1.S1_x_at--1001--9932Chr02:1424546..1424570 (25 bp)
TACCGAAATGTGTGTGCGGCCTGGG
NONE
OsAffx.24083.1.S1_x_at--1007--4472Chr02:1424564..1424588 (25 bp)
GCCTGGGGCGTTGCTAATTCATCCT
NONE
OsAffx.24083.1.S1_x_at--243--9252Chr02:1424585..1424609 (25 bp)
TCCTTCGCTCGGTCGCTCCATTAAT
NONE
OsAffx.24083.1.S1_x_at--525--10632Chr02:1424588..1424612 (25 bp)
TTCGCTCGGTCGCTCCATTAATTTG
NONE
OsAffx.24083.1.S1_x_at--383--9332Chr02:1424589..1424613 (25 bp)
TCGCTCGGTCGCTCCATTAATTTGT
NONE
OsAffx.24083.1.S1_x_at--316--4812Chr02:1424591..1424615 (25 bp)
GCTCGGTCGCTCCATTAATTTGTAA
NONE
OsAffx.24083.1.S1_x_at--673--3772Chr02:1424592..1424616 (25 bp)
CTCGGTCGCTCCATTAATTTGTAAT
NONE
OsAffx.24083.1.S1_x_at--810--3972Chr02:1424594..1424618 (25 bp)
CGGTCGCTCCATTAATTTGTAATAT
NONE
OsAffx.24083.1.S1_x_at--683--7232Chr02:1424596..1424620 (25 bp)
GTCGCTCCATTAATTTGTAATATAA
NONE
OsAffx.24083.1.S1_x_at--722--10191Chr02:1420938..1420962 (25 bp)
TATATATCCATGTATTTTGTGTAAA
LOC_Os02g03490
Target Sequence 
TGGAGGGAGTATATGCAAACCTCGCGATTTGTGATAATTAATTAACTACCGAAATGTGTGTGCGGCCTGGGGCGTTGCTA
ATTCATCCTTCGCTCGGTCGCTCCATTAATTTGTAATATAAATATATATCCATGTATTTTGTGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24083.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis