Browse Element(s) Details


Os.27658.1.S1_a_at

Description gb:AK060422.1
DB_XREF= gi:32970440
TID=Os.27658.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27658 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023015H14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-010-G07, full insert sequence.
FL= gb:AK060422.1 gb:AK099092.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0354011/11Ribose-phosphate pyrophosphokinase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03470Os.54187.1.A1_at11/112+1412107..1416005expressed protein
LOC_Os02g03470Os.27739.1.A1_at11/112+1412107..1416005expressed protein
LOC_Os02g03470Os.54187.1.A1_x_at11/112+1412107..1416005expressed protein
LOC_Os02g03480OsAffx.24082.1.S1_s_at11/112+1416610..1417705expressed protein
LOC_Os02g03490OsAffx.24083.1.S1_x_at11/112+1420014..1420997expressed protein
LOC_Os02g03490Os.10395.1.S1_s_at9/112+1420014..1420997expressed protein
LOC_Os02g03500Os.10395.1.S1_s_at9/112+1423747..1424390expressed protein
LOC_Os02g03510Os.11067.1.S1_at11/112+1427398..1428118expressed protein
LOC_Os02g03510Os.10395.1.S1_s_at9/112+1427398..1428118expressed protein
LOC_Os02g03520Os.12307.1.S1_at10/112+1430330..1430872expressed protein
LOC_Os02g03530OsAffx.11878.1.S1_at11/112+1433310..1436848expressed protein
LOC_Os02g03530OsAffx.11878.1.S1_s_at11/112+1433310..1436848expressed protein
LOC_Os02g03540Os.27658.1.S1_a_at11/112+1437433..1441125Ribose-phosphate pyrophosphokinase 1, putative, expressed
LOC_Os02g03550Os.53507.1.S1_at10/112+1443911..1446402xyloglucan endotransglucosylase/hydrolase protein 28precursor, putative, expressed
LOC_Os02g03560Os.13649.1.S1_at11/112+1447139..1449635expressed protein
LOC_Os02g03570OsAffx.11879.1.S1_at11/112+1450176..1450766Hsp20/alpha crystallin family protein, expressed
LOC_Os02g03580Os.26491.1.S1_at11/112+1457228..1461428Transcription factor HBP-1a, putative, expressed
LOC_Os02g03580OsAffx.24084.1.S1_at11/112+1457228..1461428Transcription factor HBP-1a, putative, expressed
LOC_Os02g03580OsAffx.24084.1.S1_x_at11/112+1457228..1461428Transcription factor HBP-1a, putative, expressed
LOC_Os02g03580Os.47413.1.S1_at1/112+1457228..1461428Transcription factor HBP-1a, putative, expressed
LOC_Os02g03590Os.54039.1.S1_at6/112+1461924..1468160expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009165biological_processnucleotide biosynthesis
GO:0004749molecular_functionribose phosphate diphosphokinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27658.1.S1_a_at--477--8751Chr02:1438385..1438404 (20 bp)
TGTACACATGCTGTTTTTAGCCCGC
LOC_Os02g03540
Os.27658.1.S1_a_at--416--1671Chr02:1438069..1438093 (25 bp)
AGCCCGCCCGCCATTGAAAGGTTAT
LOC_Os02g03540
Os.27658.1.S1_a_at--408--6191Chr02:1437994..1438018 (25 bp)
GAGGACAAGAGTTTCCCGCAGCTGA
LOC_Os02g03540
Os.27658.1.S1_a_at--391--5691Chr02:1437971..1437995 (25 bp)
GACTATCCTTTCAGTTGCTAACCTT
LOC_Os02g03540
Os.27658.1.S1_a_at--44--911Chr02:1437944..1437968 (25 bp)
AGGCGAGACAATCTGGCGTGTTCAT
LOC_Os02g03540
Os.27658.1.S1_a_at--124--7831Chr02:1437696..1437720 (25 bp)
GGTCATGAGCCATACTCTAGCTTGG
LOC_Os02g03540
Os.27658.1.S1_a_at--134--5411Chr02:1437662..1437686 (25 bp)
GAAGCTCAAGGTGTATCACGCCCAA
LOC_Os02g03540
Os.27658.1.S1_a_at--288--7451Chr02:1437590..1437614 (25 bp)
GTGTAATCTGATGCTCCTACTAGTG
LOC_Os02g03540
Os.27658.1.S1_a_at--1091--1191Chr02:1437511..1437535 (25 bp)
AGTTTGGTTTGCTAGCATGCTCAGT
LOC_Os02g03540
Os.27658.1.S1_a_at--144--7031Chr02:1437481..1437505 (25 bp)
GTACATATTGTTTCCACGTGATCCA
LOC_Os02g03540
Os.27658.1.S1_a_at--190--1911Chr02:1437466..1437490 (25 bp)
ACGTGATCCATTTATTTCTTTGCAA
LOC_Os02g03540
Target Sequence 
TGTACACATGCTGTTTTTAGCCCGCCCGCCATTGAAAGGTTATCAAGTGGTTTGTTTCAAGAAGTAATCATCACAAACAC
TATACCTCTCAAGGAGGACAAGAGTTTCCCGCAGCTGACTATCCTTTCAGTTGCTAACCTTTTAGGCGAGACAATCTGGC
GTGTTCATGATGATTGCTCAGTTGGTCATGAGCCATACTCTAGCTTGGACATTGACTGAAGCTCAAGGTGTATCACGCCC
AATCCCCAATTTTTGGCTTTTCTCCACCTTTGGTTTCGTGGAATAAGCTGTGTAATCTGATGCTCCTACTAGTGCAAGAA
CTTTTGAGTATTTCAATGAACCATAGTACATAAGATCGAAATTTAGGTAGTTTGGTTTGCTAGCATGCTCAGTGTAATGT
ACATATTGTTTCCACGTGATCCATTTATTTCTTTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27658.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis