Browse Element(s) Details


Os.54039.1.S1_at

Description gb:AK101453.1
DB_XREF= gi:32986662
TID=Os.54039.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54039 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033039P18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033039P18, full insert sequence.
FL= gb:AK101453.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g035906/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03540Os.27658.1.S1_a_at11/112+1437433..1441125Ribose-phosphate pyrophosphokinase 1, putative, expressed
LOC_Os02g03550Os.53507.1.S1_at10/112+1443911..1446402xyloglucan endotransglucosylase/hydrolase protein 28precursor, putative, expressed
LOC_Os02g03560Os.13649.1.S1_at11/112+1447139..1449635expressed protein
LOC_Os02g03570OsAffx.11879.1.S1_at11/112+1450176..1450766Hsp20/alpha crystallin family protein, expressed
LOC_Os02g03580Os.26491.1.S1_at11/112+1457228..1461428Transcription factor HBP-1a, putative, expressed
LOC_Os02g03580OsAffx.24084.1.S1_at11/112+1457228..1461428Transcription factor HBP-1a, putative, expressed
LOC_Os02g03580OsAffx.24084.1.S1_x_at11/112+1457228..1461428Transcription factor HBP-1a, putative, expressed
LOC_Os02g03580Os.47413.1.S1_at1/112+1457228..1461428Transcription factor HBP-1a, putative, expressed
LOC_Os02g03590Os.54039.1.S1_at6/112+1461924..1468160expressed protein
LOC_Os02g03600Os.51934.1.S1_at8/112+1469295..1474710DnaJ domain containing protein, expressed
LOC_Os02g03600Os.50120.1.S1_at2/112+1469295..1474710DnaJ domain containing protein, expressed
LOC_Os02g03610Os.18586.1.S1_at11/112+1476344..1480285ADP-ribosylation factor, putative, expressed
LOC_Os02g03620Os.9115.1.S1_at11/112+1481242..1485111Ubiquitin ligase SINAT2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54039.1.S1_at--589--2691Chr02:1462109..1462133 (25 bp)
AAGCTCTGTGCAACCTTGACAATTG
LOC_Os02g03590
Os.54039.1.S1_at--623--6271Chr02:1462085..1462109 (25 bp)
GATGTCGCAAATCAGTTGCCGCAAA
LOC_Os02g03590
Os.54039.1.S1_at--586--311Chr02:1462053..1462077 (25 bp)
ATACCCATTGAGACACCTTGGTGAG
LOC_Os02g03590
Os.54039.1.S1_at--753--6411Chr02:1462007..1462031 (25 bp)
GATCTCGCTGAACTAGCCCAGAAGT
LOC_Os02g03590
Os.54039.1.S1_at--718--5091Chr02:1461979..1462003 (25 bp)
GCACGCGAGTACACAGTTTCTTGGA
LOC_Os02g03590
Os.54039.1.S1_at--544--6431Chr02:1461935..1461959 (25 bp)
GATCATTCCAATCCAAGTGCTTTGC
LOC_Os02g03590
Os.54039.1.S1_at--971--5091Chr02:1461912..1461936 (25 bp)
GCACGAGAGTTGACAGCTTCCAGGA
NONE
Os.54039.1.S1_at--875--6251Chr02:1461889..1461913 (25 bp)
GATGTGCAAAATCCCGACGGCTAAC
NONE
Os.54039.1.S1_at--426--8131Chr02:1461814..1461838 (25 bp)
GGACTATTTCTCGAGCTAGCGGAGA
NONE
Os.54039.1.S1_at--4--9771Chr02:1461782..1461806 (25 bp)
TAATCCCTGTATTATTTCTCCCTTT
NONE
Os.54039.1.S1_at--385--6471Chr02:1461593..1461617 (25 bp)
GATAACCGCATAGGCTGTTGCAGCT
NONE
Target Sequence 
AAGCTCTGTGCAACCTTGACAATTGATGTCGCAAATCAGTTGCCGCAAAGGAGCAAATACCCATTGAGACACCTTGGTGA
GATCAACATCCAGATGGCGAACGATCTCGCTGAACTAGCCCAGAAGTTCCGCACGCGAGTACACAGTTTCTTGGAAGAGC
AACATTCAACAGTTGATCATTCCAATCCAAGTGCTTTGCACGAGAGTTGACAGCTTCCAGGATGTGCAAAATCCCGACGG
CTAACTGTTCTGCCCCCAATTAGCTGGGTGCAAATAACAGCTAAAGCAGCTAGGGGGACTATTTCTCGAGCTAGCGGAGA
AATTTTGTAATCCCTGTATTATTTCTCCCTTTTGGATATTTTTGTACTAATAGGTAGGGCCTTTCCTTTCCTGGGTTTGT
TTGGCTTGGCTGGGGCGAGTAAATAGGTTTTACCTGGTGGTGTACATAGAGGCTGATGCTTTCTCGCCATTTTGGGGCTA
TGTAATTCTACGCAAAGAGAAGGAAATGTACAATCAGATAACCGCATAGGCTGTTGCAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54039.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis