Browse Element(s) Details


Os.54187.1.A1_x_at

Description gb:AK102416.1
DB_XREF= gi:32987625
TID=Os.54187.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54187 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033093C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033093C05, full insert sequence.
FL= gb:AK102416.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0347011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03410Os.2355.1.S1_at11/112+1387873..1394276Protein kinase domain containing protein, expressed
LOC_Os02g03420Os.54336.1.S1_at11/112+1394865..1397141PPR868-14, putative, expressed
LOC_Os02g03430Os.51630.1.A1_at11/112+1397698..1398983expressed protein
LOC_Os02g03440OsAffx.11876.1.S1_at10/112+1399613..1401222Sm protein, expressed
LOC_Os02g03450Os.5994.1.A1_at10/112+1402582..1404558Golgi SNARE 12 protein, putative, expressed
LOC_Os02g03460OsAffx.11877.1.S1_at11/112+1406098..1409346phosphatidate cytidylyltransferase family protein, expressed
LOC_Os02g03470Os.54187.1.A1_at11/112+1412107..1416005expressed protein
LOC_Os02g03470Os.27739.1.A1_at11/112+1412107..1416005expressed protein
LOC_Os02g03470Os.54187.1.A1_x_at11/112+1412107..1416005expressed protein
LOC_Os02g03480OsAffx.24082.1.S1_s_at11/112+1416610..1417705expressed protein
LOC_Os02g03490OsAffx.24083.1.S1_x_at11/112+1420014..1420997expressed protein
LOC_Os02g03490Os.10395.1.S1_s_at9/112+1420014..1420997expressed protein
LOC_Os02g03500Os.10395.1.S1_s_at9/112+1423747..1424390expressed protein
LOC_Os02g03510Os.11067.1.S1_at11/112+1427398..1428118expressed protein
LOC_Os02g03510Os.10395.1.S1_s_at9/112+1427398..1428118expressed protein
LOC_Os02g03520Os.12307.1.S1_at10/112+1430330..1430872expressed protein
LOC_Os02g03530OsAffx.11878.1.S1_at11/112+1433310..1436848expressed protein
LOC_Os02g03530OsAffx.11878.1.S1_s_at11/112+1433310..1436848expressed protein
LOC_Os02g03540Os.27658.1.S1_a_at11/112+1437433..1441125Ribose-phosphate pyrophosphokinase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54187.1.A1_x_at--235--731Chr02:1415135..1415159 (25 bp)
ATGATTCTGCTGGAAACTCAATTGA
LOC_Os02g03470
Os.54187.1.A1_x_at--674--2531Chr02:1415149..1415173 (25 bp)
AACTCAATTGATCTCATCCTACACC
LOC_Os02g03470
Os.54187.1.A1_x_at--1053--9851Chr02:1415168..1415192 (25 bp)
TACACCTCTCTGTACTTCTCAAATT
LOC_Os02g03470
Os.54187.1.A1_x_at--671--10531Chr02:1415191..1415215 (25 bp)
TTCTCATGAACTGTGTGTAATCCTT
LOC_Os02g03470
Os.54187.1.A1_x_at--81--2231Chr02:1415315..1415339 (25 bp)
ACAAGAGCCCTCTTTGGCGTGTGTT
LOC_Os02g03470
Os.54187.1.A1_x_at--1009--8671Chr02:1415443..1415466 (24 bp)
TGTGTAGCTCGGCAATCAATCAGTT
LOC_Os02g03470
Os.54187.1.A1_x_at--249--3431Chr02:1415507..1415531 (25 bp)
CAGAGCTTGGCTTCAGAGGCACTAT
LOC_Os02g03470
Os.54187.1.A1_x_at--49--5491Chr02:1415590..1415614 (25 bp)
GAACATGAAACTCTCCTGATCTTGC
LOC_Os02g03470
Os.54187.1.A1_x_at--931--3611Chr02:1415640..1415664 (25 bp)
CTTGTGGCACAATCGCAGCTAGTCA
LOC_Os02g03470
Os.54187.1.A1_x_at--441--10371Chr02:1415721..1415745 (25 bp)
TTTTTTCTCCTGATGGCACCGAAAT
LOC_Os02g03470
Os.54187.1.A1_x_at--1109--6631Chr02:1415775..1415799 (25 bp)
GTTGTACCACACCTGTTTTGATCAT
LOC_Os02g03470
Target Sequence 
ATGATTCTGCTGGAAACTCAATTGATCTCATCCTACACCTCTCTGTACTTCTCAAATTCTCATGAACTGTGTGTAATCCT
TTATATTTTCTAGGTTCTGTATACAATGGGTGGTTTGGAAAACCTTCAAACAGCTAGAAAATATTATGCATCTACAATAC
AGTTGACTGGAGGCAAGAATACAAGAGCCCTCTTTGGCGTGTGTTTGTGTAGCTCGGCAATCAATCAGTTGACCAAAGGG
AGGAATAAGGAAGAGGAAAGCTCAGAACTGCAGAGCTTGGCTTCAGAGGCACTATTGAAGGATTACAAGCAACGAGCACC
GTCGAAGGAGGCACTCATCACCAGCCTGTTGAAGAACATGAAACTCTCCTGATCTTGCCCTCCACTCATCGAAGGTTTTT
TAGCTTGTGGCACAATCGCAGCTAGTCAGTGGCGCCACAATGGCAGTTTGACAAATCAATTGATAGCAGTATAATGCTTG
TTTTTTTTTCTCCTGATGGCACCGAAATTGTAAAACTTATGTAAGATGCTTCAATGGGTTGTACCACACCTGTTTTGATC
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54187.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis