Browse Element(s) Details


Os.16582.1.S1_at

Description gb:CR290175
DB_XREF= gi:44676741
DB_XREF=CR290175
CLONE=y787f03p3
TID=Os.16582.1
CNT=10
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.16582 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cytochrome c oxidase subunit 6b-1 (P0594D10.25), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4291011/11Cytochrome c oxidase subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42869NANA7+25669191..25669658NA
LOC_Os07g42880Os.42789.1.S1_at11/117+25670506..25672380Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os07g42890Os.16990.1.S1_a_at11/117+25676187..25678108GRAM domain-containing protein, putative, expressed
LOC_Os07g42890Os.18586.1.S1_at1/117+25676187..25678108GRAM domain-containing protein, putative, expressed
LOC_Os07g42900Os.24981.1.A1_at10/117+25681707..25688178Helicase associated domain family protein, expressed
LOC_Os07g42910OsAffx.28880.1.S1_s_at11/117+25690143..25693050Cytochrome c oxidase subunit, putative, expressed
LOC_Os07g42910Os.16582.1.S1_at11/117+25690143..25693050Cytochrome c oxidase subunit, putative, expressed
LOC_Os07g42910OsAffx.28880.1.S1_at10/117+25690143..25693050Cytochrome c oxidase subunit, putative, expressed
LOC_Os07g42924OsAffx.5614.1.S1_at11/117+25695200..25702385oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os07g42924OsAffx.5615.1.S1_at11/117+25695200..25702385oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os07g42924Os.34358.1.S1_at11/117+25695200..25702385oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os07g42924Os.11584.2.S1_x_at1/117+25695200..25702385oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os07g42940Os.16704.1.S1_at11/117+25716112..25720314Serine/threonine-protein kinase SAPK2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005739cellular_componentmitochondrion
GO:0004129molecular_functioncytochrome-c oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16582.1.S1_at--481--5531Chr07:25690380..25690404 (25 bp)
GAAAAACCCATGCTATCATCCCACA
LOC_Os07g42910
Os.16582.1.S1_at--121--431Chr07:25690343..25690367 (25 bp)
ATCTTTCATGAATAACCGGACAAAA
LOC_Os07g42910
Os.16582.1.S1_at--819--4371Chr07:25690315..25690339 (25 bp)
CCAAGAGCTGATGCTGTCAGTCACT
LOC_Os07g42910
Os.16582.1.S1_at--188--6351Chr07:25690306..25690330 (25 bp)
GATGCTGTCAGTCACTTGTTTCTAT
LOC_Os07g42910
Os.16582.1.S1_at--701--3451Chr07:25690298..25690322 (25 bp)
CAGTCACTTGTTTCTATTGAACAGT
LOC_Os07g42910
Os.16582.1.S1_at--1037--2831Chr07:25690261..25690285 (25 bp)
AAGTCCTGACTGGTTCTAAGTCGAA
LOC_Os07g42910
Os.16582.1.S1_at--553--6731Chr07:25690249..25690273 (25 bp)
GTTCTAAGTCGAAGAAGGCGCTTCT
LOC_Os07g42910
Os.16582.1.S1_at--1067--5271Chr07:25690236..25690260 (25 bp)
GAAGGCGCTTCTGTATTTAGGTAAC
LOC_Os07g42910
Os.16582.1.S1_at--862--2171Chr07:25690213..25690237 (25 bp)
ACACAGTTGTTACGGAATTGTTCAA
LOC_Os07g42910
Os.16582.1.S1_at--228--3091Chr07:25690189..25690213 (25 bp)
AATAATTCACCTTTGGAACAATGGA
LOC_Os07g42910
Os.16582.1.S1_at--691--2231Chr07:25690172..25690196 (25 bp)
ACAATGGAATGTACCCAGCTTGCTG
LOC_Os07g42910
Target Sequence 
GAAAAACCCATGCTATCATCCCACAAATTCCCAACCAATCTTTCATGAATAACCGGACAAAATAACCAAGAGCTGATGCT
GTCAGTCACTTGTTTCTATTGAACAGTTCTTACAAATAAAAGTCCTGACTGGTTCTAAGTCGAAGAAGGCGCTTCTGTAT
TTAGGTAACACAGTTGTTACGGAATTGTTCAAATAATTCACCTTTGGAACAATGGAATGTACCCAGCTTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16582.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis