Browse Element(s) Details


Os.16990.1.S1_a_at

Description gb:AK071567.1
DB_XREF= gi:32981590
TID=Os.16990.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.16990 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST C91668(E31216)~similar to FH protein interacting protein FIP1 (P0594D10.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023100G12, full insert sequence.
FL= gb:AK059824.1 gb:AK071567.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4289011/11GRAM domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42834Os.7450.1.S1_at11/117+25650754..25658431expressed protein
LOC_Os07g42834Os.32823.2.S1_s_at10/117+25650754..25658431expressed protein
LOC_Os07g42834Os.4899.1.S2_at1/117+25650754..25658431expressed protein
LOC_Os07g42850OsAffx.16688.1.S1_at10/117+25659875..25660627hypothetical protein
LOC_Os07g42860Os.22837.1.A1_at11/117+25661213..25663621Cyclin, N-terminal domain containing protein, expressed
LOC_Os07g42869NANA7+25669191..25669658NA
LOC_Os07g42880Os.42789.1.S1_at11/117+25670506..25672380Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os07g42890Os.16990.1.S1_a_at11/117+25676187..25678108GRAM domain-containing protein, putative, expressed
LOC_Os07g42890Os.18586.1.S1_at1/117+25676187..25678108GRAM domain-containing protein, putative, expressed
LOC_Os07g42900Os.24981.1.A1_at10/117+25681707..25688178Helicase associated domain family protein, expressed
LOC_Os07g42910OsAffx.28880.1.S1_s_at11/117+25690143..25693050Cytochrome c oxidase subunit, putative, expressed
LOC_Os07g42910Os.16582.1.S1_at11/117+25690143..25693050Cytochrome c oxidase subunit, putative, expressed
LOC_Os07g42910OsAffx.28880.1.S1_at10/117+25690143..25693050Cytochrome c oxidase subunit, putative, expressed
LOC_Os07g42924OsAffx.5614.1.S1_at11/117+25695200..25702385oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os07g42924OsAffx.5615.1.S1_at11/117+25695200..25702385oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os07g42924Os.34358.1.S1_at11/117+25695200..25702385oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os07g42924Os.11584.2.S1_x_at1/117+25695200..25702385oxidoreductase, zinc-binding dehydrogenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16990.1.S1_a_at--1036--2931Chr07:25677089..25677113 (25 bp)
AAGGCGTACGCATGCTACCTTTCGA
LOC_Os07g42890
Os.16990.1.S1_a_at--386--6431Chr07:25677127..25677151 (25 bp)
GATCATGGGCGTCTTGTACATCTCC
LOC_Os07g42890
Os.16990.1.S1_a_at--1136--1131Chr07:25677179..25677203 (25 bp)
AGTCCTGTGGCGTATGTCACCGAGG
LOC_Os07g42890
Os.16990.1.S1_a_at--175--2871Chr07:25677665..25677688 (24 bp)
AAGGTAGTTGTACCCGTTGCTCAGC
LOC_Os07g42890
Os.16990.1.S1_a_at--924--6671Chr07:25677679..25677703 (25 bp)
GTTGCTCAGCTAAGATCAGTCACTC
LOC_Os07g42890
Os.16990.1.S1_a_at--915--3531Chr07:25677738..25677762 (25 bp)
CATCCAGGTGGTTTCTGTCGACAAC
LOC_Os07g42890
Os.16990.1.S1_a_at--37--6891Chr07:25677861..25677885 (25 bp)
GTATTTTTTGTGAACATCGCCGTTA
LOC_Os07g42890
Os.16990.1.S1_a_at--191--2111Chr07:25677885..25677909 (25 bp)
ACATGTATTGATCTGTCCGTCGTTC
LOC_Os07g42890
Os.16990.1.S1_a_at--419--9391Chr07:25677904..25677928 (25 bp)
TCGTTCGTCATGCATCACTGGGAAT
LOC_Os07g42890
Os.16990.1.S1_a_at--1120--2231Chr07:25677948..25677972 (25 bp)
AAATTGTCTGTACAGATCGCTCCCC
LOC_Os07g42890
Os.16990.1.S1_a_at--1047--3571Chr07:25678081..25678105 (25 bp)
CATTAAAGCCTTTCTGTTCGTTGTT
LOC_Os07g42890
Target Sequence 
AAGGCGTACGCATGCTACCTTTCGACCTCTCATGGCCCGATCATGGGCGTCTTGTACATCTCCACTGCCAAGATTGCATT
TTGCAGTGACAGTCCTGTGGCGTATGTCACCGAGGATAATAAGAACCAATCTTCCATCTACAAGGTAGTTGTACCCGTTG
CTCAGCTAAGATCAGTCACTCCTACGGCAAGCCAGCAGAACCCAGCAGAGAGGTACATCCAGGTGGTTTCTGTCGACAAC
CATGACTTCTGGTTCATGGGCTTCGTCAACTACGACGGTGCCGTGAAGAGCCTCCAGGAGGCCGTTCGTGGCGGCAAGGC
TTCACTTCACCATCACATGTATTTTTTGTGAACATCGCCGTTACATGTATTGATCTGTCCGTCGTTCGTCATGCATCACT
GGGAATTCGCATGTGTCGGTGTGTTAAATTGTCTGTACAGATCGCTCCCCTTGCTGTGTATATTGGCTGAAATTTGTGTT
GCATATGCATTCATGTATTGTATGTAGTGTGTGGACTAGATGTGTACAAATACTGGATTGATTGTTGGCTTGATGCTCCA
TTAAAGCCTTTCTGTTCGTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16990.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis