Browse Element(s) Details


Os.4899.1.S2_at

Description gb:AK110143.1
DB_XREF= gi:32995352
TID=Os.4899.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4899 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (B1148D12.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-161-D09, full insert sequence.
FL= gb:AK110143.1 gb:AK060836.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g428341/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42780OsAffx.28878.1.S1_at11/117+25625908..25626796hypothetical protein
LOC_Os07g42790OsAffx.16687.1.S1_at11/117+25631975..25632871hypothetical protein
LOC_Os07g42800Os.26773.1.S1_at10/117+25635025..25638199AT hook-containing MAR binding 1, putative, expressed
LOC_Os07g42810Os.26704.1.S1_a_at11/117+25639156..25644150Adaptor complexes medium subunit family protein, expressed
LOC_Os07g42810Os.26704.3.S1_at11/117+25639156..25644150Adaptor complexes medium subunit family protein, expressed
LOC_Os07g42820Os.2213.1.S1_a_at11/117+25644294..25647463small GTP-binding protein domain containing protein, expressed
LOC_Os07g42820Os.2213.2.S1_x_at11/117+25644294..25647463small GTP-binding protein domain containing protein, expressed
LOC_Os07g42820Os.2213.1.S1_at10/117+25644294..25647463small GTP-binding protein domain containing protein, expressed
LOC_Os07g42834Os.7450.1.S1_at11/117+25650754..25658431expressed protein
LOC_Os07g42834Os.32823.2.S1_s_at10/117+25650754..25658431expressed protein
LOC_Os07g42834Os.4899.1.S2_at1/117+25650754..25658431expressed protein
LOC_Os07g42850OsAffx.16688.1.S1_at10/117+25659875..25660627hypothetical protein
LOC_Os07g42860Os.22837.1.A1_at11/117+25661213..25663621Cyclin, N-terminal domain containing protein, expressed
LOC_Os07g42869NANA7+25669191..25669658NA
LOC_Os07g42880Os.42789.1.S1_at11/117+25670506..25672380Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os07g42890Os.16990.1.S1_a_at11/117+25676187..25678108GRAM domain-containing protein, putative, expressed
LOC_Os07g42890Os.18586.1.S1_at1/117+25676187..25678108GRAM domain-containing protein, putative, expressed
LOC_Os07g42900Os.24981.1.A1_at10/117+25681707..25688178Helicase associated domain family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4899.1.S2_at--1160--1991NONE
ACTCGCTCGAGAACGGCTTCGCCAT
NONE
Os.4899.1.S2_at--1099--5111NONE
GCACATCCAGGACCGATTCAAGCAG
NONE
Os.4899.1.S2_at--961--5431NONE
GAACCTGCGCGAGTACTCGAAGCAG
NONE
Os.4899.1.S2_at--765--971NONE
AGGAGTCGAACCTCGCTTCGGCGGA
NONE
Os.4899.1.S2_at--518--8091NONE
GGAGCGCGAGCTGTACCAGCGCATC
NONE
Os.4899.1.S2_at--401--5651NONE
GACAGAGTGTCGACCACGCCAAGAA
NONE
Os.4899.1.S2_at--955--7771NONE
GGTGCTCGCCTGATGTACGTTCTGC
NONE
Os.4899.1.S2_at--1015--6571NONE
GATTCTGTGATTGTACCTTGTCCTC
NONE
Os.4899.1.S2_at--527--8711NONE
TGTCCTCACGCATTCTGTCTATAGA
NONE
Os.4899.1.S2_at--973--1311NONE
AGATGGCAACGCACTCTGCTATAAA
NONE
Os.4899.1.S2_at--537--3011Chr07:25654259..25654406 (24 bp)
AATGCGGTTGTCATCCAAAACACAT
LOC_Os07g42834
Target Sequence 
ACTCGCTCGAGAACGGCTTCGCCATCTGGGACTTCAAGGGCCAGGAGCTGCAGAAGCACATCCAGGACCGATTCAAGCAG
ATCCTCTGGCGCCCGCGCCCACGCACCTTGCTGTCCAAGGAGGACCAGAAGAAGGTGCGCAAGAACCTGCGCGAGTACTC
GAAGCAGTTCGAGGAGGAGGATGCGGCCGAGGAGTCGAACCTCGCTTCGGCGGAGCGCGAGCTGTACCAGCGCATCCTCG
AGGAGTGGAAGGCGTGGCGTGCGCGCTCGCGTCGCGATCTCGAGCAGCTGCGCGAGGATCTCGGACGCGAGGCGGTCGGA
CAGAGTGTCGACCACGCCAAGAAGCTGGCCGAAGAGGCGACCGAGGAGGTGCAAGAGTGGATGGAGGAGATCATCGAGGA
GACCGAGGAGGTGCTCGCCTGATGTACGTTCTGCTCGCTTCTCCCCCGGGCGCGTCGATTCTGTGATTGTACCTTGTCCT
CACGCATTCTGTCTATAGATGGCAACGCACTCTGCTATAAAATGCGGTTGTCATCCAAAACACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4899.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis