Browse Element(s) Details


OsAffx.16688.1.S1_at

Description tigr:9635.m04294
TID=OsAffx.16688.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4285010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42800Os.26773.1.S1_at10/117+25635025..25638199AT hook-containing MAR binding 1, putative, expressed
LOC_Os07g42810Os.26704.1.S1_a_at11/117+25639156..25644150Adaptor complexes medium subunit family protein, expressed
LOC_Os07g42810Os.26704.3.S1_at11/117+25639156..25644150Adaptor complexes medium subunit family protein, expressed
LOC_Os07g42820Os.2213.1.S1_a_at11/117+25644294..25647463small GTP-binding protein domain containing protein, expressed
LOC_Os07g42820Os.2213.2.S1_x_at11/117+25644294..25647463small GTP-binding protein domain containing protein, expressed
LOC_Os07g42820Os.2213.1.S1_at10/117+25644294..25647463small GTP-binding protein domain containing protein, expressed
LOC_Os07g42834Os.7450.1.S1_at11/117+25650754..25658431expressed protein
LOC_Os07g42834Os.32823.2.S1_s_at10/117+25650754..25658431expressed protein
LOC_Os07g42834Os.4899.1.S2_at1/117+25650754..25658431expressed protein
LOC_Os07g42850OsAffx.16688.1.S1_at10/117+25659875..25660627hypothetical protein
LOC_Os07g42860Os.22837.1.A1_at11/117+25661213..25663621Cyclin, N-terminal domain containing protein, expressed
LOC_Os07g42869NANA7+25669191..25669658NA
LOC_Os07g42880Os.42789.1.S1_at11/117+25670506..25672380Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os07g42890Os.16990.1.S1_a_at11/117+25676187..25678108GRAM domain-containing protein, putative, expressed
LOC_Os07g42890Os.18586.1.S1_at1/117+25676187..25678108GRAM domain-containing protein, putative, expressed
LOC_Os07g42900Os.24981.1.A1_at10/117+25681707..25688178Helicase associated domain family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16688.1.S1_at--901--1791Chr07:25660640..25660664 (25 bp)
ACCGCAACTCCGAACACAGATTCAG
NONE
OsAffx.16688.1.S1_at--1111--31Chr07:25660586..25660610 (25 bp)
ATTGAGTCACCTAGAATGTTACCGA
LOC_Os07g42850
OsAffx.16688.1.S1_at--107--10031Chr07:25660575..25660599 (25 bp)
TAGAATGTTACCGAATCCCAATCCC
LOC_Os07g42850
OsAffx.16688.1.S1_at--449--551Chr07:25660555..25660579 (25 bp)
ATCCCGCAACTCCACATGAACAATG
LOC_Os07g42850
OsAffx.16688.1.S1_at--607--2231Chr07:25660536..25660560 (25 bp)
ACAATGTTGTCGTTACAACTCACCG
LOC_Os07g42850
OsAffx.16688.1.S1_at--453--7251Chr07:25660022..25660046 (25 bp)
GTCCGTGAAGACAACCCCTGAAATG
LOC_Os07g42850
OsAffx.16688.1.S1_at--1006--5351Chr07:25659991..25660015 (25 bp)
GAAGAGGCTGCAGCTATGCCAACTG
LOC_Os07g42850
OsAffx.16688.1.S1_at--1058--571Chr07:25659976..25660000 (25 bp)
ATGCCAACTGCTATTTTACTCATGC
LOC_Os07g42850
OsAffx.16688.1.S1_at--599--1231Chr07:25659942..25659966 (25 bp)
AGTTGAAGACTTCAGTCCTCACACC
LOC_Os07g42850
OsAffx.16688.1.S1_at--391--2171Chr07:25659922..25659946 (25 bp)
ACACCTGCCATGGTCTCTGTACTGT
LOC_Os07g42850
OsAffx.16688.1.S1_at--369--7171Chr07:25659910..25659934 (25 bp)
GTCTCTGTACTGTGGACCCATGATA
LOC_Os07g42850
Target Sequence 
ACCGCAACTCCGAACACAGATTCAGTGACATTCCCCCATGACATTCTCGGTGACATTGAGTCACCTAGAATGTTACCGAA
TCCCAATCCCGCAACTCCACATGAACAATGTTGTCGTTACAACTCACCGNNNAGTGTCCGTGAAGACAACCCCTGAAATG
GGTGAAGAAGAGGCTGCAGCTATGCCAACTGCTATTTTACTCATGCAATGCAAGGAGTTGAAGACTTCAGTCCTCACACC
TGCCATGGTCTCTGTACTGTGGACCCATGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16688.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis