Browse Element(s) Details


Os.22837.1.A1_at

Description gb:AK063671.1
DB_XREF= gi:32973689
TID=Os.22837.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22837 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) D-type cyclin-like protein (P0594D10.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-D07, full insert sequence.
FL= gb:AK063671.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4286011/11Cyclin, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42800Os.26773.1.S1_at10/117+25635025..25638199AT hook-containing MAR binding 1, putative, expressed
LOC_Os07g42810Os.26704.1.S1_a_at11/117+25639156..25644150Adaptor complexes medium subunit family protein, expressed
LOC_Os07g42810Os.26704.3.S1_at11/117+25639156..25644150Adaptor complexes medium subunit family protein, expressed
LOC_Os07g42820Os.2213.1.S1_a_at11/117+25644294..25647463small GTP-binding protein domain containing protein, expressed
LOC_Os07g42820Os.2213.2.S1_x_at11/117+25644294..25647463small GTP-binding protein domain containing protein, expressed
LOC_Os07g42820Os.2213.1.S1_at10/117+25644294..25647463small GTP-binding protein domain containing protein, expressed
LOC_Os07g42834Os.7450.1.S1_at11/117+25650754..25658431expressed protein
LOC_Os07g42834Os.32823.2.S1_s_at10/117+25650754..25658431expressed protein
LOC_Os07g42834Os.4899.1.S2_at1/117+25650754..25658431expressed protein
LOC_Os07g42850OsAffx.16688.1.S1_at10/117+25659875..25660627hypothetical protein
LOC_Os07g42860Os.22837.1.A1_at11/117+25661213..25663621Cyclin, N-terminal domain containing protein, expressed
LOC_Os07g42869NANA7+25669191..25669658NA
LOC_Os07g42880Os.42789.1.S1_at11/117+25670506..25672380Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os07g42890Os.16990.1.S1_a_at11/117+25676187..25678108GRAM domain-containing protein, putative, expressed
LOC_Os07g42890Os.18586.1.S1_at1/117+25676187..25678108GRAM domain-containing protein, putative, expressed
LOC_Os07g42900Os.24981.1.A1_at10/117+25681707..25688178Helicase associated domain family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0000080biological_processG1 phase of mitotic cell cycle
GO:0009744biological_processresponse to sucrose stimulus
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016538molecular_functioncyclin-dependent protein kinase regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22837.1.A1_at--1099--1471Chr07:25661713..25661737 (25 bp)
AGCAATGCAAGCTCTTCAGTTCCAC
LOC_Os07g42860
Os.22837.1.A1_at--832--9671Chr07:25661679..25661703 (25 bp)
TCACCGTGTTGGACGCGGCGTGCTT
LOC_Os07g42860
Os.22837.1.A1_at--73--5631Chr07:25661638..25661662 (25 bp)
GACACAACACTAGGATCATCACAGT
LOC_Os07g42860
Os.22837.1.A1_at--329--2191Chr07:25661601..25661625 (25 bp)
ACAAAGATTACAACAGCCAGGACTC
LOC_Os07g42860
Os.22837.1.A1_at--237--7031Chr07:25661525..25661549 (25 bp)
GTACATACATAACTTGGCATTGCTT
LOC_Os07g42860
Os.22837.1.A1_at--238--4891Chr07:25661504..25661528 (25 bp)
GCTTTGCAATTGTTCATTCAGTGAG
LOC_Os07g42860
Os.22837.1.A1_at--917--1111Chr07:25661485..25661509 (25 bp)
AGTGAGCAACTCATCAGGGTAGCAA
LOC_Os07g42860
Os.22837.1.A1_at--835--1191Chr07:25661461..25661485 (25 bp)
AGTAGTGGTGCATGGCGAGCATCAT
LOC_Os07g42860
Os.22837.1.A1_at--920--391Chr07:25661396..25661420 (25 bp)
ATCAGCTTCTTGAACTCTGGATGAA
LOC_Os07g42860
Os.22837.1.A1_at--86--10551Chr07:25661335..25661359 (25 bp)
TTCTTCCTCTTGCAGTTTTGTTCCC
LOC_Os07g42860
Os.22837.1.A1_at--940--10291Chr07:25661309..25661333 (25 bp)
TTTCCTCCTGCTTCTATTTATCTTT
LOC_Os07g42860
Target Sequence 
AGCAATGCAAGCTCTTCAGTTCCACACAGCCCGATCACCGTGTTGGACGCGGCGTGCTTCAGTTTTAGGAGTGATGACAC
AACACTAGGATCATCACAGTCAAACAGCAACAACAAAGATTACAACAGCCAGGACTCTGCTCCTGCTTCCAAGAGGAGGA
GATTAAACACAACACCAATCTGATAACTGTACATACATAACTTGGCATTGCTTTGCAATTGTTCATTCAGTGAGCAACTC
ATCAGGGTAGCAAGTAGTGGTGCATGGCGAGCATCATCATAACAAGCAAGGATGAAAGTGAGCAGTAATAAGCTAGTATC
AGCTTCTTGAACTCTGGATGAAGAGAGAAAGGGTGTGTTTTGAGGAGAGGAGGAAGTCTTCTTCCTCTTGCAGTTTTGTT
CCCCTTTCCTCCTGCTTCTATTTATCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22837.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis