Browse Element(s) Details


OsAffx.16687.1.S1_at

Description gb:NM_189853.1
DB_XREF= gi:34906789
GEN=P0560B08.25
TID=OsAffx.16687.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GlimmerM etc. (P0560B08.25), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4279011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42760Os.45890.1.S1_at11/117+25610528..25614569SAP domain-containing protein, putative, expressed
LOC_Os07g42770Os.12643.3.S1_x_at11/117+25615470..25620127CDPK-related protein kinase, putative, expressed
LOC_Os07g42770Os.12643.1.S1_a_at11/117+25615470..25620127CDPK-related protein kinase, putative, expressed
LOC_Os07g42780OsAffx.28878.1.S1_at11/117+25625908..25626796hypothetical protein
LOC_Os07g42790OsAffx.16687.1.S1_at11/117+25631975..25632871hypothetical protein
LOC_Os07g42800Os.26773.1.S1_at10/117+25635025..25638199AT hook-containing MAR binding 1, putative, expressed
LOC_Os07g42810Os.26704.1.S1_a_at11/117+25639156..25644150Adaptor complexes medium subunit family protein, expressed
LOC_Os07g42810Os.26704.3.S1_at11/117+25639156..25644150Adaptor complexes medium subunit family protein, expressed
LOC_Os07g42820Os.2213.1.S1_a_at11/117+25644294..25647463small GTP-binding protein domain containing protein, expressed
LOC_Os07g42820Os.2213.2.S1_x_at11/117+25644294..25647463small GTP-binding protein domain containing protein, expressed
LOC_Os07g42820Os.2213.1.S1_at10/117+25644294..25647463small GTP-binding protein domain containing protein, expressed
LOC_Os07g42834Os.7450.1.S1_at11/117+25650754..25658431expressed protein
LOC_Os07g42834Os.32823.2.S1_s_at10/117+25650754..25658431expressed protein
LOC_Os07g42834Os.4899.1.S2_at1/117+25650754..25658431expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16687.1.S1_at--221--8411Chr07:25632276..25632300 (25 bp)
GGCGCCGCGTTGATCGCGCGCGCGA
LOC_Os07g42790
OsAffx.16687.1.S1_at--1059--5891Chr07:25632302..25632326 (25 bp)
GAGCTGCGTCGGCTGCGGTCGGAAG
LOC_Os07g42790
OsAffx.16687.1.S1_at--163--4671Chr07:25632762..25632786 (25 bp)
GCGGGACTCGCCTCGCCGCGAGGAA
LOC_Os07g42790
OsAffx.16687.1.S1_at--765--9331Chr07:25632774..25632798 (25 bp)
TCGCCGCGAGGAAGCTACCCAGCTG
LOC_Os07g42790
OsAffx.16687.1.S1_at--927--4611Chr07:25632779..25632803 (25 bp)
GCGAGGAAGCTACCCAGCTGGCTCT
LOC_Os07g42790
OsAffx.16687.1.S1_at--851--6191Chr07:25632781..25632805 (25 bp)
GAGGAAGCTACCCAGCTGGCTCTGC
LOC_Os07g42790
OsAffx.16687.1.S1_at--57--951Chr07:25632782..25632806 (25 bp)
AGGAAGCTACCCAGCTGGCTCTGCG
LOC_Os07g42790
OsAffx.16687.1.S1_at--573--9951Chr07:25632789..25632813 (25 bp)
TACCCAGCTGGCTCTGCGCCGTTGG
LOC_Os07g42790
OsAffx.16687.1.S1_at--736--4251Chr07:25632814..25632838 (25 bp)
CCGGAGTGGCGGACGTTCCCAAGCA
LOC_Os07g42790
OsAffx.16687.1.S1_at--72--8031Chr07:25632816..25632840 (25 bp)
GGAGTGGCGGACGTTCCCAAGCAAC
LOC_Os07g42790
OsAffx.16687.1.S1_at--1091--6111Chr07:25632817..25632841 (25 bp)
GAGTGGCGGACGTTCCCAAGCAACA
LOC_Os07g42790
Target Sequence 
GGCGCCGCGTTGATCGCGCGCGCGACGAGCTGCGTCGGCTGCGGTCGGAAGCCGCCGCGGCGAGGGAGGAGATTGGGGCG
GTGGAGCGGCGGGTGCTCGTCCGGCGCCAGGCCGCGCGCGCGCTGCAGCTGGCCGAGCGCGCCGTGGCGGCGGAGGCCCA
CACGCTGGCGTGGTCCGCGGCCGCGGCCGCCGAGCAGGCCGCGCGCGCGCCGGGCGCCGGCGCCGACGCCGCACACCACG
ACGTCGTGGCTCTCCCGGCGCGGATGCTGGAGGAGCTGCGCAGGGGCGTGGAGGCCGAGGAGAGGAAGGCCGAGGCGCGC
GTCGAGGAGGCCGAGGCTCTGCGCCGCGCGGCGAAGGCGCGCCGTGCCGCGGCCGCGGCGAGGCTGGCCGAGGCGCGCGC
CAGGAAGCGGGAGGCCGCCGAGCAGGGGCGCCGCCGCGACGCCGAGAACGAGCGCGGCGACAACGCGGCGAGGAGGAGCC
GGAGCGGCGGGACTCGCCTCGCCGCGAGGAAGCTACCCAGCTGGCTCTGCGCCGTTGGCCGGAGTGGCGGACGTTCCCAA
GCAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16687.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis