Browse Element(s) Details


Os.11584.2.S1_x_at

Description gb:NM_187677.1
DB_XREF= gi:34902439
GEN=OJ1217B09.15
TID=Os.11584.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.11584 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) Putative alcohol dehydrogenase (OJ1217B09.15), mRNA.
PROD=Putative alcohol dehydrogenase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0899910/11oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os07g429241/11oxidoreductase, zinc-binding dehydrogenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08950Os.20602.2.S1_x_at11/113+4625814..4627994hAT family dimerisation domain containing protein
LOC_Os03g08960Os.38013.2.S1_x_at11/113+4632047..4633905Homeobox domain containing protein, expressed
LOC_Os03g08960Os.38013.1.S1_a_at11/113+4632047..4633905Homeobox domain containing protein, expressed
LOC_Os03g08970Os.8111.1.S1_at11/113+4639974..4641187expressed protein
LOC_Os03g08980Os.9479.1.S1_at11/113+4644428..4646061expressed protein
LOC_Os03g08999Os.11584.1.S1_at11/113+4646378..4659082oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g08999Os.11584.1.S1_s_at11/113+4646378..4659082oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g08999OsAffx.25023.1.S1_at11/113+4646378..4659082oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g08999Os.11584.2.S1_x_at10/113+4646378..4659082oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g08999OsAffx.15844.1.S1_at1/113+4646378..4659082oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g09020Os.19283.1.S1_s_at11/113+4661471..4664413oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g09030Os.57179.1.S1_at4/113+4668629..4669186hypothetical protein
LOC_Os03g09040OsAffx.25024.1.S1_at10/113+4671730..4672641hypothetical protein
LOC_Os03g09050OsAffx.12794.1.S1_at11/113+4673954..4674592hypothetical protein
LOC_Os03g09060Os.35677.1.S1_at11/113+4676357..46792501,4-dihydroxy-2-naphthoate phytyltransferase family protein, expressed
LOC_Os03g09070Os.43892.1.S1_at11/113+4681084..4684605leucine-rich repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11584.2.S1_x_at--149--4251Chr03:4658780..4658804 (25 bp)
CCGTCGAGGAGATCGTCGTGGACCC
LOC_Os03g08999
Os.11584.2.S1_x_at--1040--6031Chr03:4658772..4658796 (25 bp)
GAGATCGTCGTGGACCCGCCCAAGG
LOC_Os03g08999
Os.11584.2.S1_x_at--85--3212Chr07:25702119..25702140 (22 bp)
CAAGGCGCACGAGGTCCGGATCAAG
LOC_Os07g42924
Os.11584.2.S1_x_at--51--4071Chr03:4658743..4658767 (25 bp)
CGAGGTCCGGATCAAGATCGTCTGC
LOC_Os03g08999
Os.11584.2.S1_x_at--455--1651Chr03:4658703..4658727 (25 bp)
AGCGACGTCACGTTCTGGCGTATGC
LOC_Os03g08999
Os.11584.2.S1_x_at--877--1891Chr03:4658700..4658723 (24 bp)
ACGTCACGTTCTGGCGTATGCAGGA
LOC_Os03g08999
Os.11584.2.S1_x_at--555--6691NONE
GTTCTGGCGTATGCAGGATTTCCCC
NONE
Os.11584.2.S1_x_at--505--10111Chr03:4658142..4658164 (23 bp)
TATGCAGGATTTCCCCGGCGTTTTC
LOC_Os03g08999
Os.11584.2.S1_x_at--569--10651Chr03:4658120..4658144 (25 bp)
TTCCCGAGGATTTTTGGGCACGAAG
LOC_Os03g08999
Os.11584.2.S1_x_at--765--6531Chr03:4658113..4658136 (24 bp)
GATTTTTGGGCACGAAGCCTTCGGA
LOC_Os03g08999
Os.11584.2.S1_x_at--18--5411Chr03:4658054..4658123 (25 bp)
GAAGCCTTCGGATGGCCCACATTGA
LOC_Os03g08999
Target Sequence 
CCGTCGAGGAGATCGTCGTGGACCCGCCCAAGGCGCACGAGGTCCGGATCAAGATCGTCTGCACCTCGCTCTGCCACAGC
GACGTCACGTTCTGGCGTATGCAGGATTTCCCCGGCGTTTTCCCGAGGATTTTTGGGCACGAAGCCTTCGGATGGCCCAC
ATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11584.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis