Browse Element(s) Details


Os.9479.1.S1_at

Description gb:AK069700.1
DB_XREF= gi:32979724
TID=Os.9479.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9479 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Unknown protein (OJ1217B09.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023027B20, full insert sequence.
FL= gb:AK069700.1 gb:AK072254.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0898011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08950Os.20602.2.S1_x_at11/113+4625814..4627994hAT family dimerisation domain containing protein
LOC_Os03g08960Os.38013.2.S1_x_at11/113+4632047..4633905Homeobox domain containing protein, expressed
LOC_Os03g08960Os.38013.1.S1_a_at11/113+4632047..4633905Homeobox domain containing protein, expressed
LOC_Os03g08970Os.8111.1.S1_at11/113+4639974..4641187expressed protein
LOC_Os03g08980Os.9479.1.S1_at11/113+4644428..4646061expressed protein
LOC_Os03g08999Os.11584.1.S1_at11/113+4646378..4659082oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g08999Os.11584.1.S1_s_at11/113+4646378..4659082oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g08999OsAffx.25023.1.S1_at11/113+4646378..4659082oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g08999Os.11584.2.S1_x_at10/113+4646378..4659082oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g08999OsAffx.15844.1.S1_at1/113+4646378..4659082oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g09020Os.19283.1.S1_s_at11/113+4661471..4664413oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g09030Os.57179.1.S1_at4/113+4668629..4669186hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9479.1.S1_at--903--5851Chr03:4644886..4644910 (25 bp)
GAGCCCCACAGCTTCCGGGATAAAG
LOC_Os03g08980
Os.9479.1.S1_at--73--2691Chr03:4644864..4644888 (25 bp)
AAGCTGGACATGGAGGATTCCTCGT
LOC_Os03g08980
Os.9479.1.S1_at--761--7211Chr03:4644829..4644853 (25 bp)
GTCGAGAGAACTGCACGGGCTGATC
LOC_Os03g08980
Os.9479.1.S1_at--905--1911Chr03:4644815..4644839 (25 bp)
ACGGGCTGATCAAGTGCCACTCGGA
LOC_Os03g08980
Os.9479.1.S1_at--782--5911Chr03:4644684..4644708 (25 bp)
GAGCTAAGCGCGTTCTCGACAATGC
LOC_Os03g08980
Os.9479.1.S1_at--1091--8491Chr03:4644616..4644640 (25 bp)
TGGCAGCTTGTTCCGGTTTAAGAGC
LOC_Os03g08980
Os.9479.1.S1_at--749--1171Chr03:4644578..4644602 (25 bp)
AGTAGCTGCTACTGCCGAGATTCGG
LOC_Os03g08980
Os.9479.1.S1_at--754--9511Chr03:4644539..4644563 (25 bp)
TCTCACTACCTGTTTGGGCGTGTCA
LOC_Os03g08980
Os.9479.1.S1_at--859--51Chr03:4644508..4644532 (25 bp)
ATTGATCGGTGCTTTCTGTGTACTA
LOC_Os03g08980
Os.9479.1.S1_at--423--8671Chr03:4644492..4644516 (25 bp)
TGTGTACTACTACTGGGTTTACCTT
LOC_Os03g08980
Os.9479.1.S1_at--955--10671Chr03:4644469..4644493 (25 bp)
TTCCTTTCGCCTGATCATATCATCA
LOC_Os03g08980
Target Sequence 
GAGCCCCACAGCTTCCGGGATAAAGCTGGACATGGAGGATTCCTCGTCGTCGCACGGGTCGAGAGAACTGCACGGGCTGA
TCAAGTGCCACTCGGAGGCGAGGGTGAAGCCGCCGGCGGGGCTCACCCTACCGCGGCGGAGGTCGGATAACTTCGAAGGA
TCGGTGTACGACATATTCGGGTCGATGGAAGATCAGAAGAGCGAGCTAAGCGCGTTCTCGACAATGCCGAGGTCGTTGCC
CGCACGGCGGCGGGTGATGATGCGCAAGGTTGGCAGCTTGTTCCGGTTTAAGAGCTTCAGTATCAAGTAGTAGCTGCTAC
TGCCGAGATTCGGGGCCTGTCTTCTCTTCTCACTACCTGTTTGGGCGTGTCAGTTTTGATTGATCGGTGCTTTCTGTGTA
CTACTACTGGGTTTACCTTCCTTTCGCCTGATCATATCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9479.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis