Browse Element(s) Details


Os.38013.1.S1_a_at

Description gb:AK101522.1
DB_XREF= gi:32986731
TID=Os.38013.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.38013 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Unknown protein (OJ1217B09.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033046N04, full insert sequence.
FL= gb:AK101522.1 gb:AK060119.1 gb:AK105644.1 gb:AK101601.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0896011/11Homeobox domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08930Os.31303.1.S1_at11/113+4608052..4609631Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g08940OsAffx.22270.1.S1_x_at11/113+4614255..4614680hypothetical protein
LOC_Os03g08950Os.20602.2.S1_x_at11/113+4625814..4627994hAT family dimerisation domain containing protein
LOC_Os03g08960Os.38013.2.S1_x_at11/113+4632047..4633905Homeobox domain containing protein, expressed
LOC_Os03g08960Os.38013.1.S1_a_at11/113+4632047..4633905Homeobox domain containing protein, expressed
LOC_Os03g08970Os.8111.1.S1_at11/113+4639974..4641187expressed protein
LOC_Os03g08980Os.9479.1.S1_at11/113+4644428..4646061expressed protein
LOC_Os03g08999Os.11584.1.S1_at11/113+4646378..4659082oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g08999Os.11584.1.S1_s_at11/113+4646378..4659082oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g08999OsAffx.25023.1.S1_at11/113+4646378..4659082oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g08999Os.11584.2.S1_x_at10/113+4646378..4659082oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g08999OsAffx.15844.1.S1_at1/113+4646378..4659082oxidoreductase, zinc-binding dehydrogenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009738biological_processabscisic acid mediated signaling
GO:0009787biological_processregulation of abscisic acid mediated signaling
GO:0009788biological_processnegative regulation of abscisic acid mediated signaling
GO:0009825biological_processmultidimensional cell growth
GO:0009910biological_processnegative regulation of flower development
GO:0009965biological_processleaf morphogenesis
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38013.1.S1_a_at--652--9451Chr03:4633320..4633344 (25 bp)
TCGGCGGCAACCGTGGGCTGCTCGT
LOC_Os03g08960
Os.38013.1.S1_a_at--424--4151Chr03:4633355..4633379 (25 bp)
CGCGCTCGAGTCCAAATGGCACGGT
LOC_Os03g08960
Os.38013.1.S1_a_at--755--5791Chr03:4633362..4633386 (25 bp)
GAGTCCAAATGGCACGGTCCGTACT
LOC_Os03g08960
Os.38013.1.S1_a_at--613--2291Chr03:4633368..4633392 (25 bp)
AAATGGCACGGTCCGTACTCCGACG
LOC_Os03g08960
Os.38013.1.S1_a_at--115--9031Chr03:4633398..4633422 (25 bp)
TGCAAAGGCGGCGTCTATGGCTTCA
LOC_Os03g08960
Os.38013.1.S1_a_at--227--2951Chr03:4633402..4633426 (25 bp)
AAGGCGGCGTCTATGGCTTCACGGA
LOC_Os03g08960
Os.38013.1.S1_a_at--517--8371Chr03:4633407..4633431 (25 bp)
GGCGTCTATGGCTTCACGGAGGAAT
LOC_Os03g08960
Os.38013.1.S1_a_at--267--8491Chr03:4633415..4633439 (25 bp)
TGGCTTCACGGAGGAATGGCTCGCT
LOC_Os03g08960
Os.38013.1.S1_a_at--149--3971Chr03:4633423..4633447 (25 bp)
CGGAGGAATGGCTCGCTGCCTGCTC
LOC_Os03g08960
Os.38013.1.S1_a_at--158--4291Chr03:4633441..4633465 (25 bp)
CCTGCTCCGGCGAGATGGCCGGCAA
LOC_Os03g08960
Os.38013.1.S1_a_at--296--1751Chr03:4633504..4633528 (25 bp)
ACCTCAACTTCGGTTGGTGCGCGAG
LOC_Os03g08960
Target Sequence 
TCGGCGGCAACCGTGGGCTGCTCGTCGTCGCTCCCCGCGCTCGAGTCCAAATGGCACGGTCCGTACTCCGACGACTCGTG
CAAAGGCGGCGTCTATGGCTTCACGGAGGAATGGCTCGCTGCCTGCTCCGGCGAGATGGCCGGCAACGACGCCGCCGGCT
TCTTCTCCGACGAGCACGCCTCCAACCTCAACTTCGGTTGGTGCGCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38013.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis