Browse Element(s) Details


OsAffx.22270.1.S1_x_at

Description tigr:9631.m00842
TID=OsAffx.22270.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0894011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08910Os.43896.1.S1_at9/113+4593352..4595351MatE family protein, expressed
LOC_Os03g08920Os.37432.1.S1_at11/113+4595895..4597143Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g08930Os.31303.1.S1_at11/113+4608052..4609631Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g08940OsAffx.22270.1.S1_x_at11/113+4614255..4614680hypothetical protein
LOC_Os03g08950Os.20602.2.S1_x_at11/113+4625814..4627994hAT family dimerisation domain containing protein
LOC_Os03g08960Os.38013.2.S1_x_at11/113+4632047..4633905Homeobox domain containing protein, expressed
LOC_Os03g08960Os.38013.1.S1_a_at11/113+4632047..4633905Homeobox domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22270.1.S1_x_at--505--8471Chr03:4614298..4614322 (25 bp)
TGGCGGTGTACGTGGAGGAGGCAGC
LOC_Os03g08940
OsAffx.22270.1.S1_x_at--472--4671Chr03:4614514..4614538 (25 bp)
GCGGGGCCATCTTGGGCGCCGGGAC
LOC_Os03g08940
OsAffx.22270.1.S1_x_at--1120--9151Chr03:4614558..4614582 (25 bp)
TGCGCGGCGGCCGTGACCGCGAGGA
LOC_Os03g08940
OsAffx.22270.1.S1_x_at--430--5771Chr03:4614587..4614611 (25 bp)
GACGATGGCGGCGACTACGGCGAAG
LOC_Os03g08940
OsAffx.22270.1.S1_x_at--255--4591Chr03:4614606..4614630 (25 bp)
GCGAAGCGAGCCATGGTTTTCCGGC
LOC_Os03g08940
OsAffx.22270.1.S1_x_at--28--5351Chr03:4614608..4614632 (25 bp)
GAAGCGAGCCATGGTTTTCCGGCTT
LOC_Os03g08940
OsAffx.22270.1.S1_x_at--700--2671Chr03:4614609..4614633 (25 bp)
AAGCGAGCCATGGTTTTCCGGCTTG
LOC_Os03g08940
OsAffx.22270.1.S1_x_at--320--1631Chr03:4614610..4614634 (25 bp)
AGCGAGCCATGGTTTTCCGGCTTGG
LOC_Os03g08940
OsAffx.22270.1.S1_x_at--259--5871Chr03:4614613..4614637 (25 bp)
GAGCCATGGTTTTCCGGCTTGGAAA
LOC_Os03g08940
OsAffx.22270.1.S1_x_at--237--8571Chr03:4614619..4614643 (25 bp)
TGGTTTTCCGGCTTGGAAACGTGAG
LOC_Os03g08940
OsAffx.22270.1.S1_x_at--772--9271Chr03:4614625..4614649 (25 bp)
TCCGGCTTGGAAACGTGAGTTTTCA
LOC_Os03g08940
Target Sequence 
TGGCGGTGTACGTGGAGGAGGCAGCGGGGGCGCCGGTCGGGGCGGAGACGGAGGAGGGGGTGACCGCGGACGGGGTGACG
GCGGAGGGGGCATTGGCGGCGGGGGCGTCAGTGGGCGGGGCCGGTGGAGACGCCATGGGGGACGGCGACGCGGCGGTGGG
CGGGGTGGCGACCGGCGCGGGGGCGGTGGCCGGGGACCTCGCCGGGGGAGCGGGCAGCGGGGCCATCTTGGGCGCCGGGA
CGGGGGCCGCTCCCGGGGCCTGCGCGGCGGCCGTGACCGCGAGGAGGGCGACGATGGCGGCGACTACGGCGAAGCGAGCC
ATGGTTTTCCGGCTTGGAAACGTGAGTTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22270.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis