Browse Element(s) Details


Os.37432.1.S1_at

Description gb:AK058578.1
DB_XREF= gi:32968596
TID=Os.37432.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37432 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Hypothetical protein (OJ1217B09.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-017-F04, full insert sequence.
FL= gb:AK058578.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0892011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08860Os.11749.1.S1_at11/113+4571606..4573969FH protein interacting protein FIP1, putative, expressed
LOC_Os03g08870Os.39172.1.S1_at11/113+4575202..4577373expressed protein
LOC_Os03g08880Os.32298.1.S1_at10/113+4578041..4579547expressed protein
LOC_Os03g08890OsAffx.12791.1.S1_at11/113+4582933..4583219hypothetical protein
LOC_Os03g08900NANA3+4586085..4586520expressed protein
LOC_Os03g08910Os.43896.1.S1_at9/113+4593352..4595351MatE family protein, expressed
LOC_Os03g08920Os.37432.1.S1_at11/113+4595895..4597143Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g08930Os.31303.1.S1_at11/113+4608052..4609631Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g08940OsAffx.22270.1.S1_x_at11/113+4614255..4614680hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0010200biological_processresponse to chitin
GO:0050832biological_processdefense response to fungi
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37432.1.S1_at--1150--4591Chr03:4596344..4596368 (25 bp)
GCGACGCACGACCATGAATTCGACA
LOC_Os03g08920
Os.37432.1.S1_at--1009--5911Chr03:4596319..4596343 (25 bp)
GAGCAGGGTACCCTCACTACCGGAG
LOC_Os03g08920
Os.37432.1.S1_at--351--2031Chr03:4596304..4596328 (25 bp)
ACTACCGGAGGACGCAGTCGGCCAT
LOC_Os03g08920
Os.37432.1.S1_at--1022--8231Chr03:4596262..4596286 (25 bp)
GGCACACGCTGAGGCTACCGGAGCA
LOC_Os03g08920
Os.37432.1.S1_at--954--1491Chr03:4596241..4596265 (25 bp)
AGCACGTCATGAAGGAGCTCGCCGC
LOC_Os03g08920
Os.37432.1.S1_at--7--8951Chr03:4596145..4596169 (25 bp)
TGACGTCGCTCTGGCGATCGGTGTC
LOC_Os03g08920
Os.37432.1.S1_at--926--4811Chr03:4596041..4596065 (25 bp)
GCTCAGGACGAGACACCCAGCGGGT
LOC_Os03g08920
Os.37432.1.S1_at--1082--8051Chr03:4595997..4596021 (25 bp)
GGAGAACTCCGATTCTGACGCGTTA
LOC_Os03g08920
Os.37432.1.S1_at--560--6571Chr03:4595987..4596011 (25 bp)
GATTCTGACGCGTTAAACCGAGTTT
LOC_Os03g08920
Os.37432.1.S1_at--443--10371Chr03:4595938..4595962 (25 bp)
TTTTTTCTTGTGCTTCGTTCTAATT
LOC_Os03g08920
Os.37432.1.S1_at--456--10631Chr03:4595925..4595949 (25 bp)
TTCGTTCTAATTGTGCAGCGGTGTA
LOC_Os03g08920
Target Sequence 
GCGACGCACGACCATGAATTCGACAGAGCAGGGTACCCTCACTACCGGAGGACGCAGTCGGCCATGGACGCCGCGCCGGA
CCGGCACACGCTGAGGCTACCGGAGCACGTCATGAAGGAGCTCGCCGCCGACCGCAGGCACCGGCGCGCCGCGAGCCTCG
CCGGGTACCCGGACAGCGTGGAGAGGACGCCGAGGTGGCTGACGTCGCTCTGGCGATCGGTGTCGTGGCAGAGGCAGAGC
CGGGCGGACTGGGACGCCGGAGAGGAGCACGGCGGCAGCAAAAGGGTTCACCCGGTCGCCGGAGCTCAGGACGAGACACC
CAGCGGGTCCGGCTCCGATGGGAGCAAGGAGAACTCCGATTCTGACGCGTTAAACCGAGTTTGAATTTTGTTTTCTCCTC
TTCTTTTTTTTTCTTGTGCTTCGTTCTAATTGTGCAGCGGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37432.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis