Browse Element(s) Details


Os.39172.1.S1_at

Description gb:CF277640
DB_XREF= gi:33655026
DB_XREF=14ETL--03-E04.g1
CLONE=14ETL--03-E04
TID=Os.39172.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.39172 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Hypothetical protein (OJ1217B09.3), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0887011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08840Os.53795.1.S1_at10/113+4552284..4554667expressed protein
LOC_Os03g08850Os.11213.1.S1_at11/113+4563543..4565965Leucine Rich Repeat family protein, expressed
LOC_Os03g08860Os.11749.1.S1_at11/113+4571606..4573969FH protein interacting protein FIP1, putative, expressed
LOC_Os03g08870Os.39172.1.S1_at11/113+4575202..4577373expressed protein
LOC_Os03g08880Os.32298.1.S1_at10/113+4578041..4579547expressed protein
LOC_Os03g08890OsAffx.12791.1.S1_at11/113+4582933..4583219hypothetical protein
LOC_Os03g08900NANA3+4586085..4586520expressed protein
LOC_Os03g08910Os.43896.1.S1_at9/113+4593352..4595351MatE family protein, expressed
LOC_Os03g08920Os.37432.1.S1_at11/113+4595895..4597143Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39172.1.S1_at--630--6051Chr03:4575770..4575794 (25 bp)
GAGATTTCGCTCCAGATCGACCCAA
LOC_Os03g08870
Os.39172.1.S1_at--88--3151Chr03:4575793..4575817 (25 bp)
AATTACCGCTGATTTGGATGACCAT
LOC_Os03g08870
Os.39172.1.S1_at--615--7991Chr03:4575808..4575832 (25 bp)
GGATGACCATATTGTCGGACTTCGT
LOC_Os03g08870
Os.39172.1.S1_at--277--3631Chr03:4575827..4575851 (25 bp)
CTTCGTGGGCAAGTCCGTAAGCTAA
LOC_Os03g08870
Os.39172.1.S1_at--101--691Chr03:4576999..4577023 (25 bp)
ATGACTCTGACAAAGGCCCAGGCAG
LOC_Os03g08870
Os.39172.1.S1_at--1125--8551Chr03:4577070..4577094 (25 bp)
TGGTTCGAACCATCTTTTTCATGTA
LOC_Os03g08870
Os.39172.1.S1_at--1129--9391Chr03:4577108..4577132 (25 bp)
TCGTCTGCTTCTTTCTAGTGTACCT
LOC_Os03g08870
Os.39172.1.S1_at--102--9551Chr03:4577121..4577145 (25 bp)
TCTAGTGTACCTCGTGTCCAAGTTC
LOC_Os03g08870
Os.39172.1.S1_at--119--2991Chr03:4577197..4577221 (25 bp)
AATGTTAGTTGGTACCTCCGTCAAT
LOC_Os03g08870
Os.39172.1.S1_at--8--6751Chr03:4577249..4577273 (25 bp)
GTTCATGTTACAGTACTACGGCAGA
LOC_Os03g08870
Os.39172.1.S1_at--993--2431Chr03:4577295..4577319 (25 bp)
AAAAGTGTCATTCCCCTGTATCTTG
LOC_Os03g08870
Target Sequence 
GAGATTTCGCTCCAGATCGACCCAATTACCGCTGATTTGGATGACCATATTGTCGGACTTCGTGGGCAAGTCCGTAAGCT
AAGAGGGGTTGCCCAAGAGATCCAAACAGAGGCCAAGTACCAAAATGATTTCATCTCTCAGCTGCAAATGACTCTGACAA
AGGCCCAGGCAGGCGTCAAGAATAACATGAGGAGAATAAACAAGAAAATCATACAGAATGGTTCGAACCATCTTTTTCAT
GTAATCCTCTTCGCNCTCGTCTGCTTCTTTCTAGTGTACCTCGTGTCCAAGTTCTNTAGGAGATGATGAAGCACCAAGAC
CTGACAAAAGGGAGAGATCGAGTAAAATGTTAGTTGGTACCTCCGTCAATGGCAGTTGGTAGACACTGTGTTTTGAGGTT
CATGTTACAGTACTACGGCAGAATAAGTTGATAGTTGGTGAAAAAAAGTGTCATTCCCCTGTATCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39172.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis