Browse Element(s) Details


Os.53795.1.S1_at

Description gb:AK100103.1
DB_XREF= gi:32985312
TID=Os.53795.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53795 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023004K09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023004K09, full insert sequence.
FL= gb:AK100103.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0884010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08820OsAffx.25022.1.S1_at11/113+4529981..4538266expressed protein
LOC_Os03g08830NANA3+4540343..4547764expressed protein
LOC_Os03g08840Os.53795.1.S1_at10/113+4552284..4554667expressed protein
LOC_Os03g08850Os.11213.1.S1_at11/113+4563543..4565965Leucine Rich Repeat family protein, expressed
LOC_Os03g08860Os.11749.1.S1_at11/113+4571606..4573969FH protein interacting protein FIP1, putative, expressed
LOC_Os03g08870Os.39172.1.S1_at11/113+4575202..4577373expressed protein
LOC_Os03g08880Os.32298.1.S1_at10/113+4578041..4579547expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53795.1.S1_at--951--8371Chr03:4554166..4554190 (25 bp)
GGCGATCCAGCTGCCAGCAGCAGAT
LOC_Os03g08840
Os.53795.1.S1_at--599--9171Chr03:4554234..4554258 (25 bp)
TGCCGACCTGAGCAAGCCCATCAAG
LOC_Os03g08840
Os.53795.1.S1_at--266--4071Chr03:4554413..4554437 (25 bp)
CGAGGGTTCGGAGGTACAAGCTCTT
LOC_Os03g08840
Os.53795.1.S1_at--1094--8831Chr03:4554446..4554470 (25 bp)
TGATCACTACTAGCTAGCCGTATAT
LOC_Os03g08840
Os.53795.1.S1_at--1083--5111NONE
GCACATATAGATGCATGCACGGTAT
NONE
Os.53795.1.S1_at--356--5651Chr03:4554528..4554552 (25 bp)
GACAGCTAGTAGCATATTGCAGCAA
LOC_Os03g08840
Os.53795.1.S1_at--577--3231Chr03:4554550..4554574 (25 bp)
CAAGAGCTACCTGCACTGTGTTTAA
LOC_Os03g08840
Os.53795.1.S1_at--299--6831Chr03:4554569..4554593 (25 bp)
GTTTAAGCTGTTAATATGCCCCTTA
LOC_Os03g08840
Os.53795.1.S1_at--140--591Chr03:4554584..4554608 (25 bp)
ATGCCCCTTAATTACTGTACAGGAG
LOC_Os03g08840
Os.53795.1.S1_at--483--7011Chr03:4554600..4554624 (25 bp)
GTACAGGAGAACATCTTCAGTTCTT
LOC_Os03g08840
Os.53795.1.S1_at--45--9651Chr03:4554616..4554640 (25 bp)
TCAGTTCTTCACTTGATCATGGGTT
LOC_Os03g08840
Target Sequence 
GGCGATCCAGCTGCCAGCAGCAGATCGACGGCGGCGGCGAAGGTCGTCGCCGCCCGCGGGCACTTCGCTGCCGACCTGAG
CAAGCCCATCAAGAAGCCACCGCCGGCGCCGGCGCCGCTGCCGCCGCCGTCGCCGGCACAGCGGCGTATCCTGCTGCGGC
GGTCGGCGTCGGACCTGGGCGGCCGCGTCCGCCGCGCCGACCACGACGCGCCGCCGCCGCTGTCGCCCGGCGTCGCGAGG
GGCAGGCCGAGGGTTCGGAGGTACAAGCTCTTGGAAGAGGTGATCACTACTAGCTAGCCGTATATATATAGAGAGAGAGG
AACAGCCATGCACATATAGATGCATGCACGGTATTATGTGTAGACAGCTAGTAGCATATTGCAGCAAGAGCTACCTGCAC
TGTGTTTAAGCTGTTAATATGCCCCTTAATTACTGTACAGGAGAACATCTTCAGTTCTTCACTTGATCATGGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53795.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis