Browse Element(s) Details


OsAffx.25022.1.S1_at

Description tigr:9631.m00830
TID=OsAffx.25022.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0882011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08770Os.53841.1.S1_at11/113+4512003..4515703Modifier of rudimentary protein, expressed
LOC_Os03g08790Os.6442.1.S1_at11/113+4520480..4522220Eukaryotic aspartyl protease family protein, expressed
LOC_Os03g08790Os.51676.1.S1_at1/113+4520480..4522220Eukaryotic aspartyl protease family protein, expressed
LOC_Os03g08800OsAffx.25021.1.S1_at11/113+4522223..4524205Protein CutA, chloroplast precursor, putative, expressed
LOC_Os03g08810Os.14261.1.S1_at11/113+4524423..4527122expressed protein
LOC_Os03g08820OsAffx.25022.1.S1_at11/113+4529981..4538266expressed protein
LOC_Os03g08830NANA3+4540343..4547764expressed protein
LOC_Os03g08840Os.53795.1.S1_at10/113+4552284..4554667expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25022.1.S1_at--891--2451Chr03:4536618..4536642 (25 bp)
AACAAGGGTTCAGGTTGGAATGCTA
LOC_Os03g08820
OsAffx.25022.1.S1_at--588--5271Chr03:4536635..4536659 (25 bp)
GAATGCTAGATCAAGTAGGTCCAAA
LOC_Os03g08820
OsAffx.25022.1.S1_at--81--4211Chr03:4536678..4536702 (25 bp)
CCCCAAGCTTCCTCAGAATGGTAGT
LOC_Os03g08820
OsAffx.25022.1.S1_at--526--3031Chr03:4536706..4536730 (25 bp)
AATGCCATAGGCTCTAGAACACAGA
LOC_Os03g08820
OsAffx.25022.1.S1_at--36--3432Chr03:4536727..4536751 (25 bp)
CAGAAATCAATTTCCCCAGCAGAAA
LOC_Os03g08820
OsAffx.25022.1.S1_at--1049--5331Chr03:4536761..4536785 (25 bp)
GAAGTAGGAACAACTCTTTGATTGA
LOC_Os03g08820
OsAffx.25022.1.S1_at--516--11Chr03:4536860..4536884 (25 bp)
AGGAACCAGAACTGAAAGGTCCAAT
LOC_Os03g08820
OsAffx.25022.1.S1_at--486--2871Chr03:4536875..4536899 (25 bp)
AAGGTCCAATAAAAGATTTCTCACA
LOC_Os03g08820
OsAffx.25022.1.S1_at--405--2391Chr03:4537502..4537673 (25 bp)
AAACTCGATCTGAATTCCTAAAGGT
LOC_Os03g08820
OsAffx.25022.1.S1_at--151--6751Chr03:4537672..4537696 (25 bp)
GTTCAGGAGGATCTTAATGTCGCTA
LOC_Os03g08820
OsAffx.25022.1.S1_at--911--1971Chr03:4538081..4538102 (22 bp)
ACTGCTTCACGAAGAGTTGCAGACT
LOC_Os03g08820
Target Sequence 
AACAAGGGTTCAGGTTGGAATGCTAGATCAAGTAGGTCCAAAGAAGATAGGGAAAACTACCCCCAAGCTTCCTCAGAATG
GTAGTAGGAATGCCATAGGCTCTAGAACACAGAAATCAATTTCCCCAGCAGAAAATGAGGAAAGAAGTAGGAACAACTCT
TTGATTGAGAATGATGCAAGTAGAAAGAGAAGGGACAGTTCTTCAGATGAAGATAATTTATTCTTCTCAAAGTATGATAA
AGAGGAACCAGAACTGAAAGGTCCAATAAAAGATTTCTCACAATACAAAGATTATGTTCAGGAGTACACTGAGAAATACA
AAGTTTACTCCTACTTAAACATTCAGATTGAGAAAACTCGATCTGAATTCCTAAAGGTTCAGGAGGATCTTAATGTCGCT
AAAGAAAGAGATAAGGATCTGTATTATAACATTATGGAAAGAATCAGAGACATGTATCATGAATCGGGCACAAGGCATAA
ATTGATGAAGAAGGTCTTTTCACTGCTTCACGAAGAGTTGCAGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25022.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis