Browse Element(s) Details


Os.6442.1.S1_at

Description gb:AK062232.1
DB_XREF= gi:32972250
TID=Os.6442.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6442 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-047-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-047-D08, full insert sequence.
FL= gb:AK120050.1 gb:AK062232.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0879011/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08740Os.49808.1.S1_at11/113+4492515..4497652expressed protein
LOC_Os03g08740Os.49808.1.S2_at11/113+4492515..4497652expressed protein
LOC_Os03g08754OsAffx.12789.1.S1_s_at11/113+4498642..4504591SHORT VEGETATIVE PHASE protein, putative, expressed
LOC_Os03g08754Os.22281.1.S1_at8/113+4498642..4504591SHORT VEGETATIVE PHASE protein, putative, expressed
LOC_Os03g08770Os.53841.1.S1_at11/113+4512003..4515703Modifier of rudimentary protein, expressed
LOC_Os03g08790Os.6442.1.S1_at11/113+4520480..4522220Eukaryotic aspartyl protease family protein, expressed
LOC_Os03g08790Os.51676.1.S1_at1/113+4520480..4522220Eukaryotic aspartyl protease family protein, expressed
LOC_Os03g08800OsAffx.25021.1.S1_at11/113+4522223..4524205Protein CutA, chloroplast precursor, putative, expressed
LOC_Os03g08810Os.14261.1.S1_at11/113+4524423..4527122expressed protein
LOC_Os03g08820OsAffx.25022.1.S1_at11/113+4529981..4538266expressed protein
LOC_Os03g08830NANA3+4540343..4547764expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6442.1.S1_at--1047--1511Chr03:4521775..4521799 (25 bp)
AGCAGCAGAACATCCGGGTCGTCTT
LOC_Os03g08790
Os.6442.1.S1_at--1127--3191Chr03:4521830..4521854 (25 bp)
CAAGGAGTCCTGCAACTAATTAAGA
LOC_Os03g08790
Os.6442.1.S1_at--1112--711Chr03:4521871..4521895 (25 bp)
ATGATCTACCGCTATCTCATCTAGA
LOC_Os03g08790
Os.6442.1.S1_at--1017--451Chr03:4521884..4521908 (25 bp)
ATCTCATCTAGAGCCAAGCTGCTGC
LOC_Os03g08790
Os.6442.1.S1_at--1072--3671Chr03:4521960..4521984 (25 bp)
CTTTCTGAAATCACGGTGTCCTCTT
LOC_Os03g08790
Os.6442.1.S1_at--962--7451Chr03:4521975..4521999 (25 bp)
GTGTCCTCTTGTGGGCTTGTAGCTT
LOC_Os03g08790
Os.6442.1.S1_at--661--8631Chr03:4521986..4522010 (25 bp)
TGGGCTTGTAGCTTTCCGATCTGTG
LOC_Os03g08790
Os.6442.1.S1_at--163--371Chr03:4522029..4522053 (25 bp)
ATCAAAACTTGGTCACGGGCGCCTG
LOC_Os03g08790
Os.6442.1.S1_at--661--4471Chr03:4522049..4522073 (25 bp)
GCCTGTCTCATCTGTATGTGCCAAT
LOC_Os03g08790
Os.6442.1.S1_at--971--9911Chr03:4522097..4522121 (25 bp)
TACGTACTCAGGGTTTTACCAGTGT
LOC_Os03g08790
Os.6442.1.S1_at--656--2331Chr03:4522147..4522171 (25 bp)
AAAGATCTTCATCATTTGCATCGCT
LOC_Os03g08790
Target Sequence 
AGCAGCAGAACATCCGGGTCGTCTTCGACGTCGCCAACTCCCGCGTCGGCTTCGCCAAGGAGTCCTGCAACTAATTAAGA
ATTAAGATTAATTAAGATGATCTACCGCTATCTCATCTAGAGCCAAGCTGCTGCTAGCAAATGCACGAGAACGGCTTGTG
CAGTCTATGTATTCTCTTCTTTTCCCTTTCTGAAATCACGGTGTCCTCTTGTGGGCTTGTAGCTTTCCGATCTGTGCAAT
AAGGTATACGTGACATCAAAACTTGGTCACGGGCGCCTGTCTCATCTGTATGTGCCAATAGGGCTATATCTAGGTGATTA
CGNTACGTACTCAGGGTTTTACCAGTGTGAATTGGTATGTTTACATCGATCTTAAAGATCTTCATCATTTGCATCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6442.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis