Browse Element(s) Details


OsAffx.25021.1.S1_at

Description tigr:9631.m00828
TID=OsAffx.25021.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=CutA1 divalent ion tolerance protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0880011/11Protein CutA, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08740Os.49808.1.S1_at11/113+4492515..4497652expressed protein
LOC_Os03g08740Os.49808.1.S2_at11/113+4492515..4497652expressed protein
LOC_Os03g08754OsAffx.12789.1.S1_s_at11/113+4498642..4504591SHORT VEGETATIVE PHASE protein, putative, expressed
LOC_Os03g08754Os.22281.1.S1_at8/113+4498642..4504591SHORT VEGETATIVE PHASE protein, putative, expressed
LOC_Os03g08770Os.53841.1.S1_at11/113+4512003..4515703Modifier of rudimentary protein, expressed
LOC_Os03g08790Os.6442.1.S1_at11/113+4520480..4522220Eukaryotic aspartyl protease family protein, expressed
LOC_Os03g08790Os.51676.1.S1_at1/113+4520480..4522220Eukaryotic aspartyl protease family protein, expressed
LOC_Os03g08800OsAffx.25021.1.S1_at11/113+4522223..4524205Protein CutA, chloroplast precursor, putative, expressed
LOC_Os03g08810Os.14261.1.S1_at11/113+4524423..4527122expressed protein
LOC_Os03g08820OsAffx.25022.1.S1_at11/113+4529981..4538266expressed protein
LOC_Os03g08830NANA3+4540343..4547764expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009507cellular_componentchloroplast
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25021.1.S1_at--457--7571Chr03:4524095..4524119 (25 bp)
GGGCGTTCTGTTCCTAAGCATCGGC
LOC_Os03g08800
OsAffx.25021.1.S1_at--1113--9771Chr03:4523762..4523786 (25 bp)
TAAGAGGTCTCAGCTCTGCTCGGAT
LOC_Os03g08800
OsAffx.25021.1.S1_at--402--6631Chr03:4523706..4523730 (25 bp)
GTTGTGTATGTGACTGTTCCAAACA
LOC_Os03g08800
OsAffx.25021.1.S1_at--637--5411Chr03:4523407..4523431 (25 bp)
GAAGCTGTCACAGAGCATCATCAGT
LOC_Os03g08800
OsAffx.25021.1.S1_at--152--1611Chr03:4523374..4523398 (25 bp)
AGCTGCTTGTGTCAATATAGTGCCT
LOC_Os03g08800
OsAffx.25021.1.S1_at--490--5251Chr03:4522714..4522738 (25 bp)
GAATCTCTTCTAGATGCCTTGACTG
LOC_Os03g08800
OsAffx.25021.1.S1_at--1014--6671Chr03:4522493..4522517 (25 bp)
GTTCCTGAAGTTATCGCTCTTCCCA
LOC_Os03g08800
OsAffx.25021.1.S1_at--1084--9331Chr03:4522480..4522504 (25 bp)
TCGCTCTTCCCATAACTGGTGGTAA
LOC_Os03g08800
OsAffx.25021.1.S1_at--922--7711Chr03:4522463..4522487 (25 bp)
GGTGGTAACACCAAGTACCTGGAGT
LOC_Os03g08800
OsAffx.25021.1.S1_at--195--2391Chr03:4522416..4522440 (25 bp)
AAACTGATCTGGCATTCACCCTGTT
LOC_Os03g08800
OsAffx.25021.1.S1_at--272--10531Chr03:4522402..4522426 (25 bp)
TTCACCCTGTTGTATACGCGCGCTG
LOC_Os03g08800
Target Sequence 
GGGCGTTCTGTTCCTAAGCATCGGCGCCGCCAGCGCCGCCGCCGTCGCCTGCAGGACGGGGTGCGCCTTCTCCCGCCGCC
GCTTCCCCTTCCTCGGGGTAAGAGGTCTCAGCTCTGCTCGGATGGAGTCCGCTTCCACCACCGTGCCATCCATTGTTGTG
TATGTGACTGTTCCAAACAGGGAAGCAGGGAAGAAGCTGTCACAGAGCATCATCAGTGAGAAACTAGCTGCTTGTGTCAA
TATAGTGCCTGGCATTGAATCTGTTTATTGGTGGGAGGGAAAGGTGCAAACTGATGCTGAAGAGTTACTCATAATCAAGA
CTAGAGAATCTCTTCTAGATGCCTTGACTGAACATGTCAAAGCTAACCATGAATACGATGTTCCTGAAGTTATCGCTCTT
CCCATAACTGGTGGTAACACCAAGTACCTGGAGTGGATCAAGAACAGCACCAAGGCAAACTGATCTGGCATTCACCCTGT
TGTATACGCGCGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25021.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis