Browse Element(s) Details


Os.53841.1.S1_at

Description gb:AK100356.1
DB_XREF= gi:32985565
TID=Os.53841.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53841 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023083K06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023083K06, full insert sequence.
FL= gb:AK100356.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0877011/11Modifier of rudimentary protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08740Os.49808.1.S1_at11/113+4492515..4497652expressed protein
LOC_Os03g08740Os.49808.1.S2_at11/113+4492515..4497652expressed protein
LOC_Os03g08754OsAffx.12789.1.S1_s_at11/113+4498642..4504591SHORT VEGETATIVE PHASE protein, putative, expressed
LOC_Os03g08754Os.22281.1.S1_at8/113+4498642..4504591SHORT VEGETATIVE PHASE protein, putative, expressed
LOC_Os03g08770Os.53841.1.S1_at11/113+4512003..4515703Modifier of rudimentary protein, expressed
LOC_Os03g08790Os.6442.1.S1_at11/113+4520480..4522220Eukaryotic aspartyl protease family protein, expressed
LOC_Os03g08790Os.51676.1.S1_at1/113+4520480..4522220Eukaryotic aspartyl protease family protein, expressed
LOC_Os03g08800OsAffx.25021.1.S1_at11/113+4522223..4524205Protein CutA, chloroplast precursor, putative, expressed
LOC_Os03g08810Os.14261.1.S1_at11/113+4524423..4527122expressed protein
LOC_Os03g08820OsAffx.25022.1.S1_at11/113+4529981..4538266expressed protein
LOC_Os03g08830NANA3+4540343..4547764expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53841.1.S1_at--886--8071Chr03:4514620..4514802 (25 bp)
GGAGCTCAGGAATCAGTGCACCATT
LOC_Os03g08770
Os.53841.1.S1_at--715--5831Chr03:4515326..4515350 (25 bp)
GACCTCCCAACCTTTGTTCAGAAGT
LOC_Os03g08770
Os.53841.1.S1_at--388--8231Chr03:4515401..4515425 (25 bp)
GGCAAGACCTCACTTCGCTGAAATC
LOC_Os03g08770
Os.53841.1.S1_at--365--4751Chr03:4515417..4515441 (25 bp)
GCTGAAATCCATCGGCCGTCTGTAG
LOC_Os03g08770
Os.53841.1.S1_at--385--7171Chr03:4515434..4515458 (25 bp)
GTCTGTAGGACGAACACCCTGTTGT
LOC_Os03g08770
Os.53841.1.S1_at--592--2171Chr03:4515447..4515471 (25 bp)
ACACCCTGTTGTATGAGTTTCCCAT
LOC_Os03g08770
Os.53841.1.S1_at--61--10311Chr03:4515464..4515488 (25 bp)
TTTCCCATTTCTCCATCATTCTATT
LOC_Os03g08770
Os.53841.1.S1_at--1074--8611Chr03:4515495..4515519 (25 bp)
TGGTGTCTGTCCACTTGGCTGTTTA
LOC_Os03g08770
Os.53841.1.S1_at--46--8351Chr03:4515511..4515535 (25 bp)
GGCTGTTTATCAGTGCCGCTTAATA
LOC_Os03g08770
Os.53841.1.S1_at--567--10871Chr03:4515622..4515646 (25 bp)
TTGGCTGGTGCCAACGCCAGTGAAG
LOC_Os03g08770
Os.53841.1.S1_at--107--4431Chr03:4515637..4515661 (25 bp)
GCCAGTGAAGCATTTTGACCTGTCA
LOC_Os03g08770
Target Sequence 
GGAGCTCAGGAATCAGTGCACCATTATAAGAACTACAGAACTAGCTGCTGCTCAAGATAGGTTGGCTGAGTTGGAAAGGC
AAAAGGATGAGATTATGAGGTCATATTCTCCTGCTGCACTGCTCGACAAGCTCCAAAAATCGATGGCAAAGTTGGACGAG
GAGTCGGAGGAGCTGCACCAGAAGTTCCTGGAGAAGGACATTGACCTCCCAACCTTTGTTCAGAAGTACAAAAAGCTCCG
CGCCGCCTACCACAAGCAGGCGTTGCTCCATCTCGCCGGCAAGACCTCACTTCGCTGAAATCCATCGGCCGTCTGTAGGA
CGAACACCCTGTTGTATGAGTTTCCCATTTCTCCATCATTCTATTCTGTCGTGGTGTCTGTCCACTTGGCTGTTTATCAG
TGCCGCTTAATATTGTAGGGCTTGTGAAAACGTCAGGGTTTGATTGCATTTGTAGATATACGATTGTATTCGCATCATGG
AATTTTATGTATGATCATTTGGCTGGTGCCAACGCCAGTGAAGCATTTTGACCTGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53841.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis