Browse Element(s) Details


Os.11213.1.S1_at

Description gb:AK059536.1
DB_XREF= gi:32969554
TID=Os.11213.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.11213 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative F-box containing protein TIR1 (OJ1217B09.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-E02, full insert sequence.
FL= gb:AK059536.1 gb:AK059002.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0885011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08830NANA3+4540343..4547764expressed protein
LOC_Os03g08840Os.53795.1.S1_at10/113+4552284..4554667expressed protein
LOC_Os03g08850Os.11213.1.S1_at11/113+4563543..4565965Leucine Rich Repeat family protein, expressed
LOC_Os03g08860Os.11749.1.S1_at11/113+4571606..4573969FH protein interacting protein FIP1, putative, expressed
LOC_Os03g08870Os.39172.1.S1_at11/113+4575202..4577373expressed protein
LOC_Os03g08880Os.32298.1.S1_at10/113+4578041..4579547expressed protein
LOC_Os03g08890OsAffx.12791.1.S1_at11/113+4582933..4583219hypothetical protein
LOC_Os03g08900NANA3+4586085..4586520expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11213.1.S1_at--1121--7111Chr03:4564105..4564129 (25 bp)
GTCAGGTTGCAACCTTACGCTGCAA
LOC_Os03g08850
Os.11213.1.S1_at--923--1031Chr03:4564070..4564094 (25 bp)
AGGTCGCACGGAGGCTACCAAGATT
LOC_Os03g08850
Os.11213.1.S1_at--886--8091Chr03:4564007..4564031 (25 bp)
GGACCGACAGCGTGGACATCTTATA
LOC_Os03g08850
Os.11213.1.S1_at--862--731Chr03:4563981..4564005 (25 bp)
ATGTATCGGTCGCTTGAAGGGCCAA
LOC_Os03g08850
Os.11213.1.S1_at--291--6171Chr03:4563954..4563978 (25 bp)
GAGGATGTACCACCATTCGTGAAGA
LOC_Os03g08850
Os.11213.1.S1_at--348--4771Chr03:4563921..4563945 (25 bp)
GCTGCTTCTGCAGAGTGGCACTTGA
LOC_Os03g08850
Os.11213.1.S1_at--876--6471Chr03:4563898..4563922 (25 bp)
GATACGCTGAATGCGGCCTAAGCAA
LOC_Os03g08850
Os.11213.1.S1_at--427--5311Chr03:4563813..4563837 (25 bp)
GAAGGAGTTCTAAAGCCATCTATCA
LOC_Os03g08850
Os.11213.1.S1_at--267--7331Chr03:4563708..4563732 (25 bp)
GTGCATCAGAGCAGGCTTCTTCGAG
LOC_Os03g08850
Os.11213.1.S1_at--249--7611Chr03:4563629..4563653 (25 bp)
GGGCAATCTATCTATGCCGGCACAA
LOC_Os03g08850
Os.11213.1.S1_at--998--2171Chr03:4563544..4563568 (25 bp)
ACACATTTCCTGTTTCTTGCCTTTA
LOC_Os03g08850
Target Sequence 
GTCAGGTTGCAACCTTACGCTGCAAGGTTGCAAGGAGGTCGCACGGAGGCTACCAAGATTGGTGGTGGAGCTGATAAATA
GCCAGCCTGAGAACGAAAGGACCGACAGCGTGGACATCTTATACATGTATCGGTCGCTTGAAGGGCCAAGAGAGGATGTA
CCACCATTCGTGAAGATCCTATAAGCTGCTTCTGCAGAGTGGCACTTGATACGCTGAATGCGGCCTAAGCAACAAGGGAA
GGTAAGATAGCTGGAGTCAGGCGTATGATCATTTTTTGTATGCTTGAAGTTGGAAGGAGTTCTAAAGCCATCTATCAGAG
CTGCAAATGGTTAAATTGTTGTACTACTAGTAGGGGGGGCATCGGTATATGCAAAATTTTCTACCGCAAGATCATAAGTG
CATCAGAGCAGGCTTCTTCGAGGGGGCTTCATCCCCTCAGTTTTGTTTGCTGCTCTGATGGCCTTCTGTTTGAGGGGGGC
AATCTATCTATGCCGGCACAACCACCATGGTTCCTCTAATTTTTTTCCCAACTGAAGCTTGTCATCAGATTAAATTCATT
AACACATTTCCTGTTTCTTGCCTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11213.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis