Browse Element(s) Details


OsAffx.12794.1.S1_at

Description tigr:9631.m00853
TID=OsAffx.12794.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0905011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08999Os.11584.1.S1_at11/113+4646378..4659082oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g08999Os.11584.1.S1_s_at11/113+4646378..4659082oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g08999OsAffx.25023.1.S1_at11/113+4646378..4659082oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g08999Os.11584.2.S1_x_at10/113+4646378..4659082oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g08999OsAffx.15844.1.S1_at1/113+4646378..4659082oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g09020Os.19283.1.S1_s_at11/113+4661471..4664413oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g09030Os.57179.1.S1_at4/113+4668629..4669186hypothetical protein
LOC_Os03g09040OsAffx.25024.1.S1_at10/113+4671730..4672641hypothetical protein
LOC_Os03g09050OsAffx.12794.1.S1_at11/113+4673954..4674592hypothetical protein
LOC_Os03g09060Os.35677.1.S1_at11/113+4676357..46792501,4-dihydroxy-2-naphthoate phytyltransferase family protein, expressed
LOC_Os03g09070Os.43892.1.S1_at11/113+4681084..4684605leucine-rich repeat family protein, putative, expressed
LOC_Os03g09080Os.17714.1.S1_at10/113+4694250..4698364Ubiquitin carboxyl-terminal hydrolase 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12794.1.S1_at--38--7731Chr03:4674450..4674474 (25 bp)
GGTGGAGGCGGGTCGGAATGGCCGA
LOC_Os03g09050
OsAffx.12794.1.S1_at--857--8351Chr03:4674145..4674169 (25 bp)
GGCGGTGGCGATTGGGATGCCTTCA
LOC_Os03g09050
OsAffx.12794.1.S1_at--814--7971Chr03:4674131..4674155 (25 bp)
GGATGCCTTCATCGAAGCCAGAGAT
LOC_Os03g09050
OsAffx.12794.1.S1_at--959--6351Chr03:4674130..4674154 (25 bp)
GATGCCTTCATCGAAGCCAGAGATG
LOC_Os03g09050
OsAffx.12794.1.S1_at--502--4451Chr03:4674127..4674151 (25 bp)
GCCTTCATCGAAGCCAGAGATGACG
LOC_Os03g09050
OsAffx.12794.1.S1_at--134--3551Chr03:4674122..4674146 (25 bp)
CATCGAAGCCAGAGATGACGAGGAG
LOC_Os03g09050
OsAffx.12794.1.S1_at--1014--5771Chr03:4674071..4674130 (25 bp)
GACGAGGAGGGCTTTGAGGGCGGAA
LOC_Os03g09050
OsAffx.12794.1.S1_at--927--4711Chr03:4673993..4674017 (25 bp)
GCTGGACTTGTCCATGACCATGGCG
LOC_Os03g09050
OsAffx.12794.1.S1_at--425--8531Chr03:4673991..4674015 (25 bp)
TGGACTTGTCCATGACCATGGCGGA
LOC_Os03g09050
OsAffx.12794.1.S1_at--26--8131Chr03:4673990..4674014 (25 bp)
GGACTTGTCCATGACCATGGCGGAG
LOC_Os03g09050
OsAffx.12794.1.S1_at--336--2071Chr03:4673988..4674012 (25 bp)
ACTTGTCCATGACCATGGCGGAGGA
LOC_Os03g09050
Target Sequence 
GGTGGAGGCGGGTCGGAATGGCCGACGGCGGGGGTGGGGGCGGAGGCGCCATGATGGCGGTTGCGGCGGCGGGTGGTCAA
CCGCGGCGGGGGCGGACGAAGGAGGAGCCGGCGGCGGCGGGAGCGGAGGAGGAGAAGGGCGGCGAGGATGCGGCGGCGGC
GGCGGTGGCGATTGGGATGCCTTCATCGAAGCCAGAGATGACGAGGAGGGCTTTGAGGGCGGAAGAGGCGGCGGCGGCGG
AAGCGGAAGAGGCGGGAGGCGGCGGCGGCGGCGGGAGGCTGGACTTGTCCATGACCATGGCGGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12794.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis