Browse Element(s) Details


Os.43892.1.S1_at

Description gb:CB650713
DB_XREF= gi:29645706
DB_XREF=OSJNEb15F04.r
CLONE=OSJNEb15F04
TID=Os.43892.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.43892 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Hypothetical protein (OJ1217B09.19), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0907011/11leucine-rich repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08999Os.11584.1.S1_at11/113+4646378..4659082oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g08999Os.11584.1.S1_s_at11/113+4646378..4659082oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g08999OsAffx.25023.1.S1_at11/113+4646378..4659082oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g08999Os.11584.2.S1_x_at10/113+4646378..4659082oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g08999OsAffx.15844.1.S1_at1/113+4646378..4659082oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g09020Os.19283.1.S1_s_at11/113+4661471..4664413oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g09030Os.57179.1.S1_at4/113+4668629..4669186hypothetical protein
LOC_Os03g09040OsAffx.25024.1.S1_at10/113+4671730..4672641hypothetical protein
LOC_Os03g09050OsAffx.12794.1.S1_at11/113+4673954..4674592hypothetical protein
LOC_Os03g09060Os.35677.1.S1_at11/113+4676357..46792501,4-dihydroxy-2-naphthoate phytyltransferase family protein, expressed
LOC_Os03g09070Os.43892.1.S1_at11/113+4681084..4684605leucine-rich repeat family protein, putative, expressed
LOC_Os03g09080Os.17714.1.S1_at10/113+4694250..4698364Ubiquitin carboxyl-terminal hydrolase 4, putative, expressed
LOC_Os03g09090Os.23231.1.A1_at10/113+4699765..4703179expressed protein
LOC_Os03g09090Os.53282.1.S1_at1/113+4699765..4703179expressed protein
LOC_Os03g09100Os.13903.1.S1_at10/113+4705256..4713120anther ethylene-upregulated protein ER1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43892.1.S1_at--1075--4891Chr03:4681682..4681706 (25 bp)
GCTTCAACAAGATCACCACGACGAA
LOC_Os03g09070
Os.43892.1.S1_at--224--2811Chr03:4681674..4681698 (25 bp)
AAGATCACCACGACGAAGGCGCTGG
LOC_Os03g09070
Os.43892.1.S1_at--397--9871Chr03:4681632..4681656 (25 bp)
TACAGCTCGCTGAGGGCTCTCAACC
LOC_Os03g09070
Os.43892.1.S1_at--593--9431Chr03:4681604..4681628 (25 bp)
TCGGCAACCCGGTGCAGACAAACAT
LOC_Os03g09070
Os.43892.1.S1_at--380--3971Chr03:4681595..4681619 (25 bp)
CGGTGCAGACAAACATCGGCGACGA
LOC_Os03g09070
Os.43892.1.S1_at--904--5851Chr03:4681393..4681417 (25 bp)
GAGCCCCGGCTCGTCGGTGAAGAAC
LOC_Os03g09070
Os.43892.1.S1_at--990--1031Chr03:4681323..4681347 (25 bp)
AGGTCCAAGAGCAGGCCTCACCAGG
LOC_Os03g09070
Os.43892.1.S1_at--325--1731Chr03:4681304..4681328 (25 bp)
ACCAGGGCTTCAGCCTTGCAAGGAA
LOC_Os03g09070
Os.43892.1.S1_at--1017--8271Chr03:4681255..4681279 (25 bp)
GGCATATGATGCTCTACTGAATTGG
LOC_Os03g09070
Os.43892.1.S1_at--42--2991Chr03:4681218..4681242 (25 bp)
AATGTGATGTGCTTAATCTTTGAAA
LOC_Os03g09070
Os.43892.1.S1_at--167--431Chr03:4681203..4681227 (25 bp)
ATCTTTGAAACTGCCATGCGCCATG
LOC_Os03g09070
Target Sequence 
GCTTCAACAAGATCACCACGACGAAGGCGCTGGGGCAGCTCGTCGCCAACTACAGCTCGCTGAGGGCTCTCAACCTCGTC
GGCAACCCGGTGCAGACAAACATCGGCGACGACGCGCTCCGCAAGTCGGCGTCGGGCCTCCTGTCGCGGCTCGAGTACCT
GAACAAGCAGCCCGTGANGCCGCAGCGCGCGCGGGANGCGGCCAAGGACAGCGTCGCNAAGNCGGCGCTCGGGAACGGAN
GGTNGANCTCGCGCANGCGGCCGANGCCGTCGTCGCGGCGGCTGAGCCAGAGCCCCGGCTCGTCGGTGAAGAACCGGGGG
AGGGATAATGGGAGCGGCAGCCATAGGGGCAGCAGGAGCAGGTCCAAGAGCAGGCCTCACCAGGGCTTCAGCCTTGCAAG
GAAGTGAAGCAATTTGCTAGGCAATTAGGCATATGATGCTCTACTGAATTGGAGGAAAATTTCAAATGTGATGTGCTTAA
TCTTTGAAACTGCCATGCGCCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43892.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis