Browse Element(s) Details


Os.22631.1.S1_a_at

Description gb:AK069968.1
DB_XREF= gi:32979992
TID=Os.22631.1
CNT=21
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.22631 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor (P0594D10.35), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023038D13, full insert sequence.
FL= gb:AK069968.1 gb:AB122058.1 gb:AK105687.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4296011/11Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42924OsAffx.5614.1.S1_at11/117+25695200..25702385oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os07g42924OsAffx.5615.1.S1_at11/117+25695200..25702385oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os07g42924Os.34358.1.S1_at11/117+25695200..25702385oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os07g42924Os.11584.2.S1_x_at1/117+25695200..25702385oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os07g42940Os.16704.1.S1_at11/117+25716112..25720314Serine/threonine-protein kinase SAPK2, putative, expressed
LOC_Os07g42950Os.8316.1.S1_at11/117+25721185..2572370740S ribosomal protein S6, putative, expressed
LOC_Os07g42960Os.22631.1.S1_a_at11/117+25724742..25728339Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative, expressed
LOC_Os07g42970OsAffx.5616.1.S1_at11/117+25739319..25743185Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os07g42970Os.51127.2.S1_x_at1/117+25739319..25743185Cytokinin-O-glucosyltransferase 2, putative, expressed
LOC_Os07g42980Os.35344.18.S1_x_at10/117+25745394..25749515transposon protein, putative, Mutator sub-class
LOC_Os07g42980Os.35344.3.S1_x_at9/117+25745394..25749515transposon protein, putative, Mutator sub-class
LOC_Os07g42980OsAffx.22940.5.S1_x_at3/117+25745394..25749515transposon protein, putative, Mutator sub-class
LOC_Os07g42994Os.54930.1.S1_at10/117+25751652..25758924hydrolase, alpha/beta fold family protein, expressed
LOC_Os07g42994Os.33601.3.S1_x_at1/117+25751652..25758924hydrolase, alpha/beta fold family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009618biological_processresponse to pathogenic bacteria
GO:0016089biological_processaromatic amino acid family biosynthesis, shikimate pathway
GO:0009507cellular_componentchloroplast
GO:0003849molecular_function3-deoxy-7-phosphoheptulonate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22631.1.S1_a_at--176--8991Chr07:25725726..25725750 (25 bp)
TGAAGACTCGTCCATTCGATTCCAT
LOC_Os07g42960
Os.22631.1.S1_a_at--33--9251Chr07:25725298..25725740 (25 bp)
TCCATTCGATTCCATTCTGGCTGAA
LOC_Os07g42960
Os.22631.1.S1_a_at--355--111Chr07:25725285..25725420 (25 bp)
ATTCTGGCTGAAGTACGTGCGTTCT
LOC_Os07g42960
Os.22631.1.S1_a_at--505--1171Chr07:25725274..25725298 (25 bp)
AGTACGTGCGTTCTTCGATGTCCAT
LOC_Os07g42960
Os.22631.1.S1_a_at--778--9971Chr07:25725238..25725262 (25 bp)
TAGCCACCCAGGAGGTATCCACCTG
LOC_Os07g42960
Os.22631.1.S1_a_at--516--8011Chr07:25725228..25725252 (25 bp)
GGAGGTATCCACCTGGAAATGACTG
LOC_Os07g42960
Os.22631.1.S1_a_at--522--1951Chr07:25725207..25725231 (25 bp)
ACTGGGCAGAACGTGACTGAATGCA
LOC_Os07g42960
Os.22631.1.S1_a_at--354--1911Chr07:25725197..25725221 (25 bp)
ACGTGACTGAATGCATCGGTGGATC
LOC_Os07g42960
Os.22631.1.S1_a_at--760--3851Chr07:25725191..25725215 (25 bp)
CTGAATGCATCGGTGGATCAAGGAC
LOC_Os07g42960
Os.22631.1.S1_a_at--981--7351Chr07:25725125..25725149 (25 bp)
GTGACCCAAGGCTGAACGCGTCGCA
LOC_Os07g42960
Os.22631.1.S1_a_at--1158--8971Chr07:25725113..25725137 (25 bp)
TGAACGCGTCGCAATCCCTGGAGCT
LOC_Os07g42960
Target Sequence 
TGAAGACTCGTCCATTCGATTCCATTCTGGCTGAAGTACGTGCGTTCTTCGATGTCCATGATCAAGAAGGTAGCCACCCA
GGAGGTATCCACCTGGAAATGACTGGGCAGAACGTGACTGAATGCATCGGTGGATCAAGGACCGTCACCTTCGATGACCT
GAGCGACCGCTACCACACCCACTGTGACCCAAGGCTGAACGCGTCGCAATCCCTGGAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22631.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis