Browse Element(s) Details


Os.31290.1.S1_at

Description gb:AK107576.1
DB_XREF= gi:32992785
TID=Os.31290.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31290 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST AU082121(R10455)~similar to Arabidopsis thaliana chromosome 2At2g15760~unknown protein (P0560B08.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-D09, full insert sequence.
FL= gb:AK107576.1 gb:AK072031.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4274011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42700Os.18196.1.S1_at11/117+25561731..25566146Paramyosin, putative, expressed
LOC_Os07g42714Os.12778.1.S2_at11/117+25570407..25576615retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g42714OsAffx.19542.3.S1_x_at10/117+25570407..25576615retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g42714OsAffx.9949.1.S1_at1/117+25570407..25576615retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g42730Os.12018.1.S1_at11/117+25583333..25584539EF hand family protein, expressed
LOC_Os07g42740Os.31290.1.S1_at11/117+25589533..25591115expressed protein
LOC_Os07g42750Os.51867.1.S1_at10/117+25599947..25604818DDT domain containing protein, expressed
LOC_Os07g42760Os.45890.1.S1_at11/117+25610528..25614569SAP domain-containing protein, putative, expressed
LOC_Os07g42770Os.12643.3.S1_x_at11/117+25615470..25620127CDPK-related protein kinase, putative, expressed
LOC_Os07g42770Os.12643.1.S1_a_at11/117+25615470..25620127CDPK-related protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31290.1.S1_at--696--2211Chr07:25590591..25590615 (25 bp)
ACAACCCGCAGAAGCTTCGCGGCGG
LOC_Os07g42740
Os.31290.1.S1_at--44--1651Chr07:25590668..25590692 (25 bp)
AGCGACATGCCGTACACGGTCGGCC
LOC_Os07g42740
Os.31290.1.S1_at--334--8331Chr07:25590812..25590836 (25 bp)
GGCTCCGGCTCCAATCGCGGCAAGA
LOC_Os07g42740
Os.31290.1.S1_at--1131--4511Chr07:25590839..25590863 (25 bp)
GCCGCTTGAGCGACACGCGCCATGG
LOC_Os07g42740
Os.31290.1.S1_at--33--6111Chr07:25590875..25590899 (25 bp)
GAGTCGCGCGCCATACATGCACGAT
LOC_Os07g42740
Os.31290.1.S1_at--999--4431Chr07:25590884..25590908 (25 bp)
GCCATACATGCACGATGCTCTCGAA
LOC_Os07g42740
Os.31290.1.S1_at--429--9091Chr07:25590899..25590923 (25 bp)
TGCTCTCGAACCCAACCTTGCAGAG
LOC_Os07g42740
Os.31290.1.S1_at--1138--4311Chr07:25590914..25590938 (25 bp)
CCTTGCAGAGAGATGGTCAGAAAAT
LOC_Os07g42740
Os.31290.1.S1_at--1042--3192Chr07:25590974..25590998 (25 bp)
CAATGTATTCTTTCGTTTCCTGTGA
LOC_Os07g42740
Os.31290.1.S1_at--679--2631Chr07:25590999..25591023 (25 bp)
AACCACAAGGTTTTTCATATACTAG
LOC_Os07g42740
Os.31290.1.S1_at--766--6991Chr07:25591033..25591057 (25 bp)
GTACGTAGTACATGGGATTCGCAAG
LOC_Os07g42740
Target Sequence 
ACAACCCGCAGAAGCTTCGCGGCGGCGGCGACGGCAGCGCGTCCATGCGCAAGGGCCGCGGGTCGACGGCGTCGGCCAGC
GACATGCCGTACACGGTCGGCCGCGCCGCCGCCGAGGACATGCGGCGGCGCACCACGACGCCGCTGCCGTTCCACCGGAA
CAGCCTCTTCGGCTACCTCCGCTCCAACCCGGCCATCCACAGCATCAGCCGCAAGCTCAGCGGCTCCGGCTCCAATCGCG
GCAAGACCGCCGCTTGAGCGACACGCGCCATGGCCGCCGCCGGCGAGTCGCGCGCCATACATGCACGATGCTCTCGAACC
CAACCTTGCAGAGAGATGGTCAGAAAATTTGCCAAAATTCGTCCCCTTTTTTGTTTGAATTTTCAATGTATTCTTTCGTT
TCCTGTGAAACCACAAGGTTTTTCATATACTAGTGTAGATATGTACGTAGTACATGGGATTCGCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31290.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis