Browse Element(s) Details


Os.18196.1.S1_at

Description gb:AK102884.1
DB_XREF= gi:32988093
TID=Os.18196.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18196 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative paramyosin (P0560B08.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033112J09, full insert sequence.
FL= gb:AK102884.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4270011/11Paramyosin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42650Os.22703.1.S1_at11/117+25534289..25537605expressed protein
LOC_Os07g42660Os.33794.2.S1_x_at11/117+25538752..25541034Caltractin, putative, expressed
LOC_Os07g42660OsAffx.28877.1.S1_x_at11/117+25538752..25541034Caltractin, putative, expressed
LOC_Os07g42670NANA7+25546994..25548058retrotransposon protein, putative, unclassified
LOC_Os07g42680OsAffx.21171.4.S1_x_at6/117+25551678..25555698transposon protein, putative, unclassified
LOC_Os07g42680OsAffx.21171.3.S1_x_at4/117+25551678..25555698transposon protein, putative, unclassified
LOC_Os07g42680OsAffx.21171.5.S1_at3/117+25551678..25555698transposon protein, putative, unclassified
LOC_Os07g42680OsAffx.21171.2.S1_at2/117+25551678..25555698transposon protein, putative, unclassified
LOC_Os07g42680OsAffx.21171.5.S1_x_at2/117+25551678..25555698transposon protein, putative, unclassified
LOC_Os07g42680OsAffx.20729.1.S1_x_at1/117+25551678..25555698transposon protein, putative, unclassified
LOC_Os07g42690OsAffx.22711.1.S1_x_at11/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42690OsAffx.22711.3.S1_x_at3/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42690OsAffx.22711.4.A1_x_at3/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42690OsAffx.8420.1.S1_at1/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42690OsAffx.20380.2.S1_x_at1/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42690OsAffx.22927.1.S1_x_at1/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42700Os.18196.1.S1_at11/117+25561731..25566146Paramyosin, putative, expressed
LOC_Os07g42714Os.12778.1.S2_at11/117+25570407..25576615retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g42714OsAffx.19542.3.S1_x_at10/117+25570407..25576615retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g42714OsAffx.9949.1.S1_at1/117+25570407..25576615retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g42730Os.12018.1.S1_at11/117+25583333..25584539EF hand family protein, expressed
LOC_Os07g42740Os.31290.1.S1_at11/117+25589533..25591115expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18196.1.S1_at--216--8251Chr07:25565661..25565685 (25 bp)
GGCAGTTAACCCTTTGAGTAGCTCA
LOC_Os07g42700
Os.18196.1.S1_at--1078--8631Chr07:25565745..25565769 (25 bp)
TGAGGACCTTGTTCCGAATCGGAAG
LOC_Os07g42700
Os.18196.1.S1_at--1154--1411Chr07:25565780..25565804 (25 bp)
AGAAATCTTTCTTCCCACTAATGGG
LOC_Os07g42700
Os.18196.1.S1_at--894--1991Chr07:25565796..25565820 (25 bp)
ACTAATGGGCTCTCTTTTATCCAGA
LOC_Os07g42700
Os.18196.1.S1_at--15--10371Chr07:25565810..25565834 (25 bp)
TTTTATCCAGAAAGACTCGGGCATA
LOC_Os07g42700
Os.18196.1.S1_at--254--2231Chr07:25565851..25565875 (25 bp)
ACAAGGTCCCAGGTCTTGGGCAGTT
LOC_Os07g42700
Os.18196.1.S1_at--177--7811Chr07:25565913..25565937 (25 bp)
GGTCTTGAAATTTGGTGTCTAACTT
LOC_Os07g42700
Os.18196.1.S1_at--352--2971Chr07:25566035..25566059 (25 bp)
AATGTGCATTCCTTGAGTGTAGCTA
LOC_Os07g42700
Os.18196.1.S1_at--224--6971Chr07:25566053..25566077 (25 bp)
GTAGCTATGTTCTGTAATCTCCTCA
LOC_Os07g42700
Os.18196.1.S1_at--174--7971Chr07:25566087..25566111 (25 bp)
GGATCTGACTAGTGGCATATTTCTG
LOC_Os07g42700
Os.18196.1.S1_at--518--10231Chr07:25566122..25566146 (25 bp)
TATTGTTCTGTGTAATCTTCCTCCC
LOC_Os07g42700
Target Sequence 
GGCAGTTAACCCTTTGAGTAGCTCACCTAAGAGAATTGTTGAACAGAAGGATTCTTTCTACANAAGAGTTCTCAGGTAAT
AGTTATGAGGACCTTGTTCCGAATCGGAAGCTGCNGAGGAAGAAATCTTTCTTCCCACTAATGGGCTCTCTTTTATCCAG
AAAGACTCGGGCATAAACATAGCAGAAGATAACAAGGTCCCAGGTCTTGGGCAGTTTTATTTCTGTACATTGCTGTAATA
AGTTAATTTAATTGGTCTTGAAATTTGGTGTCTAACTTAAGTTTTGATTTAATTTGTTGGTGTAAACAACCAGAGGGCGT
ATAGTGGTGTGTTTATAACAATTTTTTGGGTTACTTTGGATAAATTCTGCAAAGAAATGTGCATTCCTTGAGTGTAGCTA
TGTTCTGTAATCTCCTCAAACTGGAAAGGATCTGACTAGTGGCATATTTCTGTTGGGTATAATATTGTTCTGTGTAATCT
TCCTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18196.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis