Browse Element(s) Details


OsAffx.28877.1.S1_x_at

Description tigr:9635.m04273
TID=OsAffx.28877.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=EF hand, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4266011/11Caltractin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42626Os.42801.1.S1_at11/117+25514758..25521487leucine-rich repeat transmembrane protein kinase 1, putative, expressed
LOC_Os07g42632OsAffx.5613.1.S1_x_at11/117+25522808..25525237dihydropteroate synthase family protein, expressed
LOC_Os07g42640Os.37520.1.S1_at11/117+25529246..25532449FYVE zinc finger family protein, expressed
LOC_Os07g42640Os.48008.1.S1_x_at10/117+25529246..25532449FYVE zinc finger family protein, expressed
LOC_Os07g42650Os.22703.1.S1_at11/117+25534289..25537605expressed protein
LOC_Os07g42660Os.33794.2.S1_x_at11/117+25538752..25541034Caltractin, putative, expressed
LOC_Os07g42660OsAffx.28877.1.S1_x_at11/117+25538752..25541034Caltractin, putative, expressed
LOC_Os07g42670NANA7+25546994..25548058retrotransposon protein, putative, unclassified
LOC_Os07g42680OsAffx.21171.4.S1_x_at6/117+25551678..25555698transposon protein, putative, unclassified
LOC_Os07g42680OsAffx.21171.3.S1_x_at4/117+25551678..25555698transposon protein, putative, unclassified
LOC_Os07g42680OsAffx.21171.5.S1_at3/117+25551678..25555698transposon protein, putative, unclassified
LOC_Os07g42680OsAffx.21171.2.S1_at2/117+25551678..25555698transposon protein, putative, unclassified
LOC_Os07g42680OsAffx.21171.5.S1_x_at2/117+25551678..25555698transposon protein, putative, unclassified
LOC_Os07g42680OsAffx.20729.1.S1_x_at1/117+25551678..25555698transposon protein, putative, unclassified
LOC_Os07g42690OsAffx.22711.1.S1_x_at11/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42690OsAffx.22711.3.S1_x_at3/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42690OsAffx.22711.4.A1_x_at3/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42690OsAffx.8420.1.S1_at1/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42690OsAffx.20380.2.S1_x_at1/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42690OsAffx.22927.1.S1_x_at1/117+25556358..25559979retrotransposon protein, putative, unclassified
LOC_Os07g42700Os.18196.1.S1_at11/117+25561731..25566146Paramyosin, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005513biological_processdetection of calcium ion
GO:0009612biological_processresponse to mechanical stimulus
GO:0004871molecular_functionsignal transducer activity
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28877.1.S1_x_at--244--551Chr07:25538989..25539013 (25 bp)
ATCCGTCGACGTAGGGTTCGTCTCT
LOC_Os07g42660
OsAffx.28877.1.S1_x_at--1131--10071Chr07:25539000..25539024 (25 bp)
TAGGGTTCGTCTCTGGCCTCTTTGG
LOC_Os07g42660
OsAffx.28877.1.S1_x_at--224--8071Chr07:25539044..25539068 (25 bp)
GGAGAAGGTGAATCCCTGCGCTTTC
LOC_Os07g42660
OsAffx.28877.1.S1_x_at--566--7571Chr07:25539469..25539489 (21 bp)
GGGCGTCTACTGTCAAGGGACAGAC
LOC_Os07g42660
OsAffx.28877.1.S1_x_at--203--5911Chr07:25539510..25539534 (25 bp)
GAGCTCGCCCTCATGGATTGACGAA
LOC_Os07g42660
OsAffx.28877.1.S1_x_at--678--991Chr07:25539555..25539579 (25 bp)
AGGAGGCGTTTGATCTGTTCGACAC
LOC_Os07g42660
OsAffx.28877.1.S1_x_at--1153--6451Chr07:25539581..25539694 (25 bp)
GATAACTCTGGAACCATTGATGCCA
LOC_Os07g42660
OsAffx.28877.1.S1_x_at--1083--6651Chr07:25539699..25539815 (25 bp)
GTTGAATGTTGCCATGAGAGCCTTG
LOC_Os07g42660
OsAffx.28877.1.S1_x_at--86--6011Chr07:25539807..25539830 (24 bp)
GAGAGCCTTGGGATTTGAGATGACA
LOC_Os07g42660
OsAffx.28877.1.S1_x_at--191--5571Chr07:25540179..25540203 (25 bp)
GAAAGCATTCAGTATTATCGACCAA
LOC_Os07g42660
OsAffx.28877.1.S1_x_at--405--6511Chr07:25540569..25540593 (25 bp)
GATATTCAGCGAATTGCCAAGGAAT
LOC_Os07g42660
Target Sequence 
ATCCGTCGACGTAGGGTTCGTCTCTGGCCTCTTTGGGGGAGATGGAGACCACGGGGGAGAAGGTGAATCCCTGCGCTTTC
GTTCCGTGGGGGCGTCTACTGTCAAGGGACAGACCAGGAGGGAGAGGCCTAGAGGAGCTCGCCCTCATGGATTGACGAAG
CAGAAGAGGCAGGAAATAAAGGAGGCGTTTGATCTGTTCGACACAGATAACTCTGGAACCATTGATGCCAAAGAGTTGAA
TGTTGCCATGAGAGCCTTGGGATTTGAGATGACAGAAGAACAAATTAACCAGATGATTGCTGATGTGGACAAAGATGGTA
GTGGATCCATAGATTATGAGGAGTTTGAGCATATGATGACTGCTAAGATTGGAGAGAGAGACAGTAAAGAAGAACTTACG
AAAGCATTCAGTATTATCGACCAAGATAAAAATGGGAAGATATCAGATGTTGATATTCAGCGAATTGCCAAGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28877.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis