Browse Element(s) Details


OsAffx.5613.1.S1_x_at

Description tigr:9635.m04270
TID=OsAffx.5613.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=dihydropteroate synthase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4263211/11dihydropteroate synthase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42610OsAffx.21866.2.S1_at10/117+25499621..25503604Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g42610Os.54443.1.S1_at8/117+25499621..25503604Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g42620OsAffx.5612.1.S1_at11/117+25506866..25511148hypothetical protein
LOC_Os07g42626Os.42801.1.S1_at11/117+25514758..25521487leucine-rich repeat transmembrane protein kinase 1, putative, expressed
LOC_Os07g42632OsAffx.5613.1.S1_x_at11/117+25522808..25525237dihydropteroate synthase family protein, expressed
LOC_Os07g42640Os.37520.1.S1_at11/117+25529246..25532449FYVE zinc finger family protein, expressed
LOC_Os07g42640Os.48008.1.S1_x_at10/117+25529246..25532449FYVE zinc finger family protein, expressed
LOC_Os07g42650Os.22703.1.S1_at11/117+25534289..25537605expressed protein
LOC_Os07g42660Os.33794.2.S1_x_at11/117+25538752..25541034Caltractin, putative, expressed
LOC_Os07g42660OsAffx.28877.1.S1_x_at11/117+25538752..25541034Caltractin, putative, expressed
LOC_Os07g42670NANA7+25546994..25548058retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009396biological_processfolic acid and derivative biosynthesis
GO:0004156molecular_functiondihydropteroate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5613.1.S1_x_at--685--4771Chr07:25524322..25524346 (25 bp)
GCTGCTCTCAGTGGATACATTCTAT
LOC_Os07g42632
OsAffx.5613.1.S1_x_at--677--5331Chr07:25524350..25524374 (25 bp)
GAAGTCGCTGCTGAAGCTGTGAAAA
LOC_Os07g42632
OsAffx.5613.1.S1_x_at--15--991Chr07:25524478..25524502 (25 bp)
AGGAGATCCATCTACTATGCAAAGT
LOC_Os07g42632
OsAffx.5613.1.S1_x_at--574--6051Chr07:25524575..25524599 (25 bp)
GAGTTGTCTGGGATTCCTTTGTGGA
LOC_Os07g42632
OsAffx.5613.1.S1_x_at--886--8851Chr07:25524610..25524634 (25 bp)
TGATCCTGGTATTGGATTCTCCAAG
LOC_Os07g42632
OsAffx.5613.1.S1_x_at--937--6811Chr07:25524702..25524726 (25 bp)
GTTTAGGTGCTTCACATGTGCCAAT
LOC_Os07g42632
OsAffx.5613.1.S1_x_at--348--7271Chr07:25524719..25524743 (25 bp)
GTGCCAATTTTACTTGGACCCTCAA
LOC_Os07g42632
OsAffx.5613.1.S1_x_at--28--671Chr07:25524766..25524790 (25 bp)
ATGCAATCGTGTCAATCCCACTGAG
LOC_Os07g42632
OsAffx.5613.1.S1_x_at--956--6011Chr07:25524790..25524814 (25 bp)
GAGAGATGCTGCTACCATGGTCGTT
LOC_Os07g42632
OsAffx.5613.1.S1_x_at--288--3511Chr07:25524805..25524829 (25 bp)
CATGGTCGTTGCTACTGCTGGGATA
LOC_Os07g42632
OsAffx.5613.1.S1_x_at--176--251Chr07:25524868..25524892 (25 bp)
ATATGGCGTGGATACTGCAAAGGTC
LOC_Os07g42632
Target Sequence 
GCTGCTCTCAGTGGATACATTCTATGCAGAAGTCGCTGCTGAAGCTGTGAAAAGAGGAGTACACATTGTTAATGATGTAT
CTGGTGGACAGATTGACCCAAGAATTCTTGAAGTTGTAGCTGAACTTGGAGTTCCATATGTGACTATGCATATGAGAGGA
GATCCATCTACTATGCAAAGTGAACAGAATCTACTATACGGTGATGTTTGTAAAGAAGTTGCTTCTGAGCTATATAAAAG
GGTGAGACAAGCAGAGTTGTCTGGGATTCCTTTGTGGAGGATAGTTCTTGATCCTGGTATTGGATTCTCCAAGAATTCCA
AACATAACCTTGAAGTTATCATGGGTTTGGAATCTATTAGAACAGAGATAGGTAAAATGAGTTTAGGTGCTTCACATGTG
CCAATTTTACTTGGACCCTCAAGGAAAAGATTTTTAGGTGAAATATGCAATCGTGTCAATCCCACTGAGAGAGATGCTGC
TACCATGGTCGTTGCTACTGCTGGGATATTGAATGGTGCTAATATAGTAAGGGTGCATAATGTTAAATATGGCGTGGATA
CTGCAAAGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5613.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis