Browse Element(s) Details


OsAffx.5612.1.S1_at

Description tigr:9635.m04269
TID=OsAffx.5612.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4262011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42590OsAffx.28876.1.S1_at11/117+25486584..25488038F-box protein, putative, expressed
LOC_Os07g42600Os.37629.1.S1_at11/117+25491278..25495787Alanine aminotransferase 2, putative, expressed
LOC_Os07g42610OsAffx.21866.2.S1_at10/117+25499621..25503604Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g42610Os.54443.1.S1_at8/117+25499621..25503604Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g42620OsAffx.5612.1.S1_at11/117+25506866..25511148hypothetical protein
LOC_Os07g42626Os.42801.1.S1_at11/117+25514758..25521487leucine-rich repeat transmembrane protein kinase 1, putative, expressed
LOC_Os07g42632OsAffx.5613.1.S1_x_at11/117+25522808..25525237dihydropteroate synthase family protein, expressed
LOC_Os07g42640Os.37520.1.S1_at11/117+25529246..25532449FYVE zinc finger family protein, expressed
LOC_Os07g42640Os.48008.1.S1_x_at10/117+25529246..25532449FYVE zinc finger family protein, expressed
LOC_Os07g42650Os.22703.1.S1_at11/117+25534289..25537605expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5612.1.S1_at--996--9951Chr07:25507620..25507640 (21 bp)
TACCGATTACGTGAGTTGGGCAATG
LOC_Os07g42620
OsAffx.5612.1.S1_at--1133--8211Chr07:25507634..25507658 (25 bp)
GGCAATGGGTTATGGGTGTCCTCAC
LOC_Os07g42620
OsAffx.5612.1.S1_at--442--3391Chr07:25507663..25507687 (25 bp)
CAGCGCTTTTGTGCTGCAGACAAGC
LOC_Os07g42620
OsAffx.5612.1.S1_at--670--2931Chr07:25507692..25507716 (25 bp)
AAGGCATCCCTTCTACGGGACCAGA
LOC_Os07g42620
OsAffx.5612.1.S1_at--553--131Chr07:25507716..25507740 (25 bp)
ATTCAAGCACGAACAAGCGCGTCCG
LOC_Os07g42620
OsAffx.5612.1.S1_at--523--10871Chr07:25508488..25508508 (21 bp)
TTGGCTGGCACAAAGCACGTTTCTC
LOC_Os07g42620
OsAffx.5612.1.S1_at--663--271Chr07:25510487..25510511 (25 bp)
ATAGGATCAGACTTCTTTCCCTTTC
LOC_Os07g42620
OsAffx.5612.1.S1_at--845--10671Chr07:25510513..25510537 (25 bp)
TTCCTTGTTCATGTTGTCACCAGAC
LOC_Os07g42620
OsAffx.5612.1.S1_at--175--6111Chr07:25510936..25510960 (25 bp)
GAGTGCACGGATTGTCATCTTCACC
LOC_Os07g42620
OsAffx.5612.1.S1_at--664--431Chr07:25510952..25510976 (25 bp)
ATCTTCACCCAACGTAGGCTATGTA
LOC_Os07g42620
OsAffx.5612.1.S1_at--619--6231Chr07:25511079..25511100 (22 bp)
GATGGCGAGGTCAGCAGCAGATTCC
LOC_Os07g42620
Target Sequence 
TACCGATTACGTGAGTTGGGCAATGGGTTATGGGTGTCCTCACCCTGCAGCGCTTTTGTGCTGCAGACAAGCCGACAAGG
CATCCCTTCTACGGGACCAGATTCAAGCACGAACAAGCGCGTCCGCTTGGCTGGCACAAAGCACGTTTCTCTCTCTCCAG
TCTCTACTGTTCCATTTCACGGCCTGGCCCGGTATGTTTTTGCCGCCAAGGGAGTTGGGCTGTACAAGGATCAGATCATC
AGAGTTCATAGGATCAGACTTCTTTCCCTTTCTTTCCTTGTTCATGTTGTCACCAGACACCAGGGTCCACAGCAGAAGCA
GAGTGCACGGATTGTCATCTTCACCCAACGTAGGCTATGTACTGCAACTACTACTTCGATGGCGAGGTCAGCAGCAGATT
CC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5612.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis