Browse Element(s) Details


Os.54443.1.S1_at

Description gb:AK105179.1
DB_XREF= gi:32990388
TID=Os.54443.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54443 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-105-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-D08, full insert sequence.
FL= gb:AK105179.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g426108/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42580OsAffx.28875.1.S1_at11/117+25478899..25479467hypothetical protein
LOC_Os07g42590OsAffx.28876.1.S1_at11/117+25486584..25488038F-box protein, putative, expressed
LOC_Os07g42600Os.37629.1.S1_at11/117+25491278..25495787Alanine aminotransferase 2, putative, expressed
LOC_Os07g42610OsAffx.21866.2.S1_at10/117+25499621..25503604Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g42610Os.54443.1.S1_at8/117+25499621..25503604Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g42620OsAffx.5612.1.S1_at11/117+25506866..25511148hypothetical protein
LOC_Os07g42626Os.42801.1.S1_at11/117+25514758..25521487leucine-rich repeat transmembrane protein kinase 1, putative, expressed
LOC_Os07g42632OsAffx.5613.1.S1_x_at11/117+25522808..25525237dihydropteroate synthase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54443.1.S1_at--882--4791Chr07:25503707..25503731 (25 bp)
GCTCGCGCCAACCAAGAAGCTTGCA
NONE
Os.54443.1.S1_at--425--1431Chr07:25503693..25503717 (25 bp)
AGAAGCTTGCAACAACAGGGAGAGA
NONE
Os.54443.1.S1_at--262--3092Chr04:12366346..12366366 (21 bp)
CAAGAACGTTTTGCATTTGGAGGGA
NONE
Os.54443.1.S1_at--308--5331Chr07:25502840..25502864 (25 bp)
GAAGTCGCCGCATCCAAGCTCTTGA
LOC_Os07g42610
Os.54443.1.S1_at--299--2691Chr07:25502825..25502849 (25 bp)
AAGCTCTTGACGCTGCGTCACGTAG
LOC_Os07g42610
Os.54443.1.S1_at--33--4031Chr07:25502810..25502834 (25 bp)
CGTCACGTAGCTTCCATTTCTTTTT
LOC_Os07g42610
Os.54443.1.S1_at--1065--10811Chr07:25502760..25502784 (25 bp)
TTGTGCCGTCTTTTGTGTGCCGTCA
LOC_Os07g42610
Os.54443.1.S1_at--327--10411Chr07:25502750..25502774 (25 bp)
TTTTGTGTGCCGTCATCACAGGTTT
LOC_Os07g42610
Os.54443.1.S1_at--909--9171Chr07:25502743..25502767 (25 bp)
TGCCGTCATCACAGGTTTTGCTACT
LOC_Os07g42610
Os.54443.1.S1_at--483--1011Chr07:25502731..25502755 (25 bp)
AGGTTTTGCTACTGTCCCGGTTGCT
LOC_Os07g42610
Os.54443.1.S1_at--434--3871Chr07:25502705..25502729 (25 bp)
CTGTTCGCCACGTCTGTAATTTTCA
LOC_Os07g42610
Target Sequence 
GCTCGCGCCAACCAAGAAGCTTGCAACAACAGGGAGAGAGGTTGGAGCAAGAACGTTTTGCATTTGGAGGGAGGGATTTT
GATTGATGGCGGTGACGGCGACGACGGTGGCGGCGGCGACGACGATGATGGCGGCGGTGGCGGCCGTGTTCCCGGCAGTG
GACGCGGCGAGGGTGCGGGGGGGACTGCGGCGGCTTCTCGGGTGTGGCGGCGCGTCGCCGCCCCCACCGCCGCACCAGCA
CGAGCACGCGGACAGGGACATCGAGATGGGCCTCGCCGCCGGCGGCGAGACCAGCTCGCCGGCGAAGTCGCCGCATCCAA
GCTCTTGACGCTGCGTCACGTAGCTTCCATTTCTTTTTTCTTCTTTTTTTTTCCAACTTTTTTTTGTGCCGTCTTTTGTG
TGCCGTCATCACAGGTTTTGCTACTGTCCCGGTTGCTCCTGTTCGCCACGTCTGTAATTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54443.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis