Browse Element(s) Details


OsAffx.28875.1.S1_at

Description tigr:9635.m04265
TID=OsAffx.28875.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4258011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42540NANA7+25455144..25456228transposon protein, putative, Pong sub-class
LOC_Os07g42550OsAffx.21870.1.S1_s_at11/117+25456765..25457976hypothetical protein
LOC_Os07g42550OsAffx.21870.1.S1_at11/117+25456765..25457976hypothetical protein
LOC_Os07g42550OsAffx.21870.3.S1_x_at2/117+25456765..25457976hypothetical protein
LOC_Os07g42550OsAffx.21870.2.S1_x_at1/117+25456765..25457976hypothetical protein
LOC_Os07g42560NANA7+25464356..25466031hypothetical protein
LOC_Os07g42570OsAffx.28874.1.S1_x_at11/117+25467856..25468425Dirigent-like protein
LOC_Os07g42580OsAffx.28875.1.S1_at11/117+25478899..25479467hypothetical protein
LOC_Os07g42590OsAffx.28876.1.S1_at11/117+25486584..25488038F-box protein, putative, expressed
LOC_Os07g42600Os.37629.1.S1_at11/117+25491278..25495787Alanine aminotransferase 2, putative, expressed
LOC_Os07g42610OsAffx.21866.2.S1_at10/117+25499621..25503604Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g42610Os.54443.1.S1_at8/117+25499621..25503604Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28875.1.S1_at--968--1851Chr07:25478929..25478953 (25 bp)
ACGACTCCAAAGGCGGGTGCGACAG
LOC_Os07g42580
OsAffx.28875.1.S1_at--456--4771Chr07:25479297..25479321 (25 bp)
GCTGCGTGGATTGCCGACATGGCTA
LOC_Os07g42580
OsAffx.28875.1.S1_at--935--4471Chr07:25479309..25479333 (25 bp)
GCCGACATGGCTAAGAATATCCTGT
LOC_Os07g42580
OsAffx.28875.1.S1_at--571--3111Chr07:25479324..25479348 (25 bp)
AATATCCTGTTTTTGGTGTTGAGGC
LOC_Os07g42580
OsAffx.28875.1.S1_at--875--7411Chr07:25479339..25479363 (25 bp)
GTGTTGAGGCTGAATACCATATTGA
LOC_Os07g42580
OsAffx.28875.1.S1_at--522--6211Chr07:25479344..25479368 (25 bp)
GAGGCTGAATACCATATTGACGTAT
LOC_Os07g42580
OsAffx.28875.1.S1_at--1029--51Chr07:25479359..25479383 (25 bp)
ATTGACGTATTGTGAACGCCCTAAG
LOC_Os07g42580
OsAffx.28875.1.S1_at--681--31Chr07:25479367..25479391 (25 bp)
ATTGTGAACGCCCTAAGGAGACTAT
LOC_Os07g42580
OsAffx.28875.1.S1_at--1094--2571Chr07:25479373..25479397 (25 bp)
AACGCCCTAAGGAGACTATAGCAAG
LOC_Os07g42580
OsAffx.28875.1.S1_at--858--5571Chr07:25479398..25479422 (25 bp)
GAAAGGTACTACAGATAACAGATGG
LOC_Os07g42580
OsAffx.28875.1.S1_at--549--9811Chr07:25479413..25479437 (25 bp)
TAACAGATGGATGCTTGGCAATGCC
LOC_Os07g42580
Target Sequence 
ACGACTCCAAAGGCGGGTGCGACAGCGGAGGACCCCGAGACAGGCGGCGACAACCCCGAGGGGGGCTCAGCGGCGGACGC
CCCTGATGAGGGCTCGGCGGCGGAGGAAGCGAGGCGGGGTCGGGGGACGGCTGCGTGGATTGCCGACATGGCTAAGAATA
TCCTGTTTTTGGTGTTGAGGCTGAATACCATATTGACGTATTGTGAACGCCCTAAGGAGACTATAGCAAGGAAAGGTACT
ACAGATAACAGATGGATGCTTGGCAATGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28875.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis