Browse Element(s) Details


OsAffx.21870.1.S1_s_at

Description gb:NM_189813.1
DB_XREF= gi:34906709
TID=OsAffx.21870.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GENSCAN etc. (B1056G08.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4255011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42490Os.9860.1.S1_at11/117+25427944..25433439Sucrose synthase 3, putative, expressed
LOC_Os07g42500Os.8759.1.S1_at10/117+25434067..25437987Senescence-associated, putative, expressed
LOC_Os07g42510Os.10293.1.S1_at11/117+25439123..25441000AP2 domain containing protein, expressed
LOC_Os07g42520Os.42812.1.A1_at11/117+25444852..25445626Dirigent-like protein, expressed
LOC_Os07g42530Os.35344.18.S1_x_at11/117+25447710..25453480transposon protein, putative, Mutator sub-class
LOC_Os07g42530Os.35344.3.S1_x_at8/117+25447710..25453480transposon protein, putative, Mutator sub-class
LOC_Os07g42530OsAffx.22940.5.S1_x_at3/117+25447710..25453480transposon protein, putative, Mutator sub-class
LOC_Os07g42540NANA7+25455144..25456228transposon protein, putative, Pong sub-class
LOC_Os07g42550OsAffx.21870.1.S1_s_at11/117+25456765..25457976hypothetical protein
LOC_Os07g42550OsAffx.21870.1.S1_at11/117+25456765..25457976hypothetical protein
LOC_Os07g42550OsAffx.21870.3.S1_x_at2/117+25456765..25457976hypothetical protein
LOC_Os07g42550OsAffx.21870.2.S1_x_at1/117+25456765..25457976hypothetical protein
LOC_Os07g42560NANA7+25464356..25466031hypothetical protein
LOC_Os07g42570OsAffx.28874.1.S1_x_at11/117+25467856..25468425Dirigent-like protein
LOC_Os07g42580OsAffx.28875.1.S1_at11/117+25478899..25479467hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21870.1.S1_s_at--494--1355Chr03:8065051..8065378 (25 bp)
AGAGAGGGCGCTCTCTCTCGCTCAG
NONE
OsAffx.21870.1.S1_s_at--515--9511Chr07:25457010..25457034 (25 bp)
TCTCTCTCGCTCAGAGCGCGTGCGA
LOC_Os07g42550
OsAffx.21870.1.S1_s_at--966--3411Chr07:25456999..25457023 (25 bp)
CAGAGCGCGTGCGACACACGTGCTG
LOC_Os07g42550
OsAffx.21870.1.S1_s_at--950--6192Chr07:25456935..25456959 (25 bp)
GAGGAATCAGCCCAAAAGATCGACG
LOC_Os07g42550
OsAffx.21870.1.S1_s_at--940--5232Chr07:25456932..25456956 (25 bp)
GAATCAGCCCAAAAGATCGACGGAG
LOC_Os07g42550
OsAffx.21870.1.S1_s_at--589--2632Chr07:25456928..25456952 (25 bp)
CAGCCCAAAAGATCGACGGAGGTAA
LOC_Os07g42550
OsAffx.21870.1.S1_s_at--472--10552Chr07:25456881..25456905 (25 bp)
TTCTTTAAGGAATATGAGGAGCATT
LOC_Os07g42550
OsAffx.21870.1.S1_s_at--289--10132Chr07:25456869..25456893 (25 bp)
TATGAGGAGCATTTGACGCTGGATT
LOC_Os07g42550
OsAffx.21870.1.S1_s_at--769--5912Chr07:25456863..25456887 (25 bp)
GAGCATTTGACGCTGGATTTGAATT
LOC_Os07g42550
OsAffx.21870.1.S1_s_at--748--3572Chr07:25456860..25456884 (25 bp)
CATTTGACGCTGGATTTGAATTCAA
LOC_Os07g42550
OsAffx.21870.1.S1_s_at--73--211Chr07:25456828..25456852 (25 bp)
ATTTGAACTCAACAGAATATGGAGA
LOC_Os07g42550
Target Sequence 
AGAGAGGGCGCTCTCTCTCGCTCAGAGCGCGTGCGACACACGTGCTGGGGGGAACGTGCCGAGAGAGGAGAGTTGGGCCA
GGGAAGGAGGAATCAGCCCAAAAGATCGACGGAGGTAAAATAGACTTTTACCCAGAAAATTTCTTTAAGGAATATGAGGA
GCATTTGACGCTGGATTTGAATTCAAATTGGATATTTGAACTCAACAGAATATGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21870.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis