Browse Element(s) Details


Os.9860.1.S1_at

Description gb:AK100306.1
DB_XREF= gi:32985515
TID=Os.9860.1
CNT=24
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.9860 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) sucrose synthase 3 (Sucrose-UDP glucosyltransferase 3) (B1056G08.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078G01, full insert sequence.
FL= gb:AK100306.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4249011/11Sucrose synthase 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42430Os.9884.1.S1_at11/117+25402585..25404256expressed protein
LOC_Os07g42440Os.42814.1.S1_x_at11/117+25406651..25412086expressed protein
LOC_Os07g42440OsAffx.16684.1.S1_at10/117+25406651..25412086expressed protein
LOC_Os07g42450Os.8273.1.S1_s_at11/117+25411737..2541398940S ribosomal protein SA, putative, expressed
LOC_Os07g42450Os.8273.1.S1_at11/117+25411737..2541398940S ribosomal protein SA, putative, expressed
LOC_Os07g42460NANA7+25416580..25419714transposon protein, putative, unclassified
LOC_Os07g42470OsAffx.16685.1.S1_at11/117+25421546..25423670hypothetical protein
LOC_Os07g42490Os.9860.1.S1_at11/117+25427944..25433439Sucrose synthase 3, putative, expressed
LOC_Os07g42500Os.8759.1.S1_at10/117+25434067..25437987Senescence-associated, putative, expressed
LOC_Os07g42510Os.10293.1.S1_at11/117+25439123..25441000AP2 domain containing protein, expressed
LOC_Os07g42520Os.42812.1.A1_at11/117+25444852..25445626Dirigent-like protein, expressed
LOC_Os07g42530Os.35344.18.S1_x_at11/117+25447710..25453480transposon protein, putative, Mutator sub-class
LOC_Os07g42530Os.35344.3.S1_x_at8/117+25447710..25453480transposon protein, putative, Mutator sub-class
LOC_Os07g42530OsAffx.22940.5.S1_x_at3/117+25447710..25453480transposon protein, putative, Mutator sub-class
LOC_Os07g42540NANA7+25455144..25456228transposon protein, putative, Pong sub-class
LOC_Os07g42550OsAffx.21870.1.S1_s_at11/117+25456765..25457976hypothetical protein
LOC_Os07g42550OsAffx.21870.1.S1_at11/117+25456765..25457976hypothetical protein
LOC_Os07g42550OsAffx.21870.3.S1_x_at2/117+25456765..25457976hypothetical protein
LOC_Os07g42550OsAffx.21870.2.S1_x_at1/117+25456765..25457976hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0001666biological_processresponse to hypoxia
GO:0005986biological_processsucrose biosynthesis
GO:0009409biological_processresponse to cold
GO:0009413biological_processresponse to flooding
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016157molecular_functionsucrose synthase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9860.1.S1_at--1158--491Chr07:25432684..25432708 (25 bp)
ATCGTGCACGGCGTGTCTGGCTACC
LOC_Os07g42490
Os.9860.1.S1_at--53--8731Chr07:25432697..25432721 (25 bp)
TGTCTGGCTACCACATTGATCCTTA
LOC_Os07g42490
Os.9860.1.S1_at--113--3611Chr07:25432710..25432734 (25 bp)
CATTGATCCTTACCAGAACGACAAG
LOC_Os07g42490
Os.9860.1.S1_at--405--8191Chr07:25432773..25432797 (25 bp)
GGAAGACCCAAACCACTGGATCAAG
LOC_Os07g42490
Os.9860.1.S1_at--877--3971Chr07:25432969..25432993 (25 bp)
CGGTGTCTACGGTTTCTGGAAGTAT
LOC_Os07g42490
Os.9860.1.S1_at--7--3631Chr07:25433163..25433187 (25 bp)
CTACCACCGTTCCATTGGCCATTGA
LOC_Os07g42490
Os.9860.1.S1_at--1149--2271Chr07:25433204..25433228 (25 bp)
AAATGATCTGGCCTTACCCGGTGAA
LOC_Os07g42490
Os.9860.1.S1_at--199--5271Chr07:25433300..25433324 (25 bp)
GAATGCATCCATTTAGTTTCTAAGG
LOC_Os07g42490
Os.9860.1.S1_at--685--10331Chr07:25433326..25433350 (25 bp)
TTTAGTTGATTTCAGGGCCAGTTCT
LOC_Os07g42490
Os.9860.1.S1_at--163--5611Chr07:25433370..25433394 (25 bp)
GAAATTGATGTAATGCTCTGGCCTT
LOC_Os07g42490
Os.9860.1.S1_at--512--4811Chr07:25433384..25433408 (25 bp)
GCTCTGGCCTTTTCATGGATACTAT
LOC_Os07g42490
Target Sequence 
ATCGTGCACGGCGTGTCTGGCTACCACATTGATCCTTACCAGAACGACAAGGCCTCGGCGCTGCTCGTGGAGTNTCTTTG
AGAAGTGTCAGGAAGACCCAAACCACTGGATCAAGATCTCGCAGGGTGGACTTCAGCGCATCGAGGAGAAGTACACATGG
AAGCTCTACTCTGAGAGGCTGATGACTCTCTCCGGTGTCTACGGTTTCTGGAAGTATGTCACCAACCTCGACAGGCGTGA
GACACGCCGCTACCTGGAGATGCTGTACGCCCTCAAGTACCGCAAGATGGCTACCACCGTTCCATTGGCCATTGAGGGAG
AGGCCTCCACCAAATGATCTGGCCTTACCCGGTGAAAAGAATGGGCAATGGGTGCTCCATTGTTGCAGTGCTGATCCAGG
GGTGAAGAAAAACAGAAATCGAGGAACGAATGCATCCATTTAGTTTCTAAGGGTTTAGTTGATTTCAGGGCCAGTTCTTG
TGGGGTTTTCAATGGAAGAAATTGATGTAATGCTCTGGCCTTTTCATGGATACTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9860.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis